Spatially resolved human kidney multi-omics single cell atlas highlights the key role of the fibrotic microenvironment in kidney disease progression

A Abedini, J Levinsohn, KA Klötzer, B Dumoulin, Z Ma… - bioRxiv, 2022 - biorxiv.org
Kidneys possess one of the most intricate three-dimensional cellular structures in the body,
yet the spatial and molecular principles of kidney health and disease remain inadequately …

[HTML][HTML] Spatially resolved transcriptomes of mammalian kidneys illustrate the molecular complexity and interactions of functional nephron segments

AM Raghubar, DT Pham, X Tan, LF Grice… - Frontiers in …, 2022 - frontiersin.org
Available transcriptomes of the mammalian kidney provide limited information on the spatial
interplay between different functional nephron structures due to the required dissociation of …

Comprehensive cell type specific transcriptomics of the human kidney

V Sivakamasundari, M Bolisetty, S Sivajothi… - BioRxiv, 2017 - biorxiv.org
The human kidney is a complex organ composed of specialized cell types. To better define
this cellular complexity, we profiled the individual transcriptomes of 22,469 normal human …

A reference tissue atlas for the human kidney

J Hansen, R Sealfon, R Menon, MT Eadon, BB Lake… - Science …, 2022 - science.org
Kidney Precision Medicine Project (KPMP) is building a spatially specified human kidney
tissue atlas in health and disease with single-cell resolution. Here, we describe the …

[HTML][HTML] A comprehensive mouse kidney atlas enables rare cell population characterization and robust marker discovery

C Novella-Rausell, M Grudniewska, DJM Peters… - Iscience, 2023 - Elsevier
The kidney's cellular diversity is on par with its physiological intricacy; yet identifying cell
populations and their markers remains challenging. Here, we created a comprehensive …

Single‐cell RNA‐seq with spatial transcriptomics to create an atlas of human diabetic kidney disease

D Chen, M Shao, Y Song, G Ren, F Guo… - The FASEB …, 2023 - Wiley Online Library
Diabetic kidney disease (DKD) develops in~ 40% of patients with diabetes and is the
leading cause of chronic kidney disease worldwide. We used single‐cell RNA‐sequencing …

Spatially resolved transcriptomics and the kidney: many opportunities

EE Dixon, H Wu, E Sulvarán-Guel, J Guo… - Kidney International, 2022 - Elsevier
Defining changes in gene expression during health and disease is critical for the
understanding of human physiology. In recent years, single-cell/nuclei RNA sequencing …

[HTML][HTML] Single-cell transcriptomic profiles in the pathophysiology within the microenvironment of early diabetic kidney disease

YC Tsai, MC Kuo, JC Huang, WA Chang, LY Wu… - Cell Death & …, 2023 - nature.com
Diabetic kidney disease (DKD) is the leading cause of end-stage kidney disease, resulting
in a huge socio-economic impact. Kidney is a highly complex organ and the pathogenesis …

[HTML][HTML] An atlas of healthy and injured cell states and niches in the human kidney

BB Lake, R Menon, S Winfree, Q Hu, R Melo Ferreira… - Nature, 2023 - nature.com
Understanding kidney disease relies on defining the complexity of cell types and states, their
associated molecular profiles and interactions within tissue neighbourhoods. Here we …

[HTML][HTML] Myeloid heterogeneity in kidney disease as revealed through single-cell RNA sequencing

RMB Bell, L Denby - Kidney360, 2021 - journals.lww.com
Kidney disease represents a global health burden of increasing prevalence and is an
independent risk factor for cardiovascular disease. Myeloid cells are a major cellular …