We present a flexible and efficient framework for multiscale modeling in computational chemistry (MiMiC). It is based on a multiple-program multiple-data (MPMD) model with …
IG Kevrekidis, G Samaey - Annual review of physical chemistry, 2009 - annualreviews.org
In traditional physicochemical modeling, one derives evolution equations at the (macroscopic, coarse) scale of interest; these are used to perform a variety of tasks …
The goal of multiscale modeling in biology is to use structurally based physico-chemical models to integrate across temporal and spatial scales of biology and thereby improve …
CA López, X Zhang, F Aydin, R Shrestha… - Journal of Chemical …, 2022 - ACS Publications
The appeal of multiscale modeling approaches is predicated on the promise of combinatorial synergy. However, this promise can only be realized when distinct scales are …
MP Burke - International Journal of Chemical Kinetics, 2016 - Wiley Online Library
Monumental, recent and rapidly continuing, improvements in the capabilities of ab initio theoretical kinetics calculations provides reason to believe that progress in the field of …
GS Ayton, WG Noid, GA Voth - Current opinion in structural biology, 2007 - Elsevier
Considerable progress has been recently achieved in the multiscale modeling of complex biological processes. Multiscale models have now investigated the structure and dynamics …
Multiscale simulation is a promising approach for addressing a variety of real-world engineering problems. Various mathematical approaches have been proposed to link single …
Coarse-grained molecular dynamics provides a means for simulating the assembly and the interactions of membrane protein/lipid complexes at a reduced level of representation …
RAS is a signaling protein associated with the cell membrane that is mutated in up to 30% of human cancers. RAS signaling has been proposed to be regulated by dynamic …