Registration of in-vivo to ex-vivo MRI of surgically resected specimens: a pipeline for histology to in-vivo registration

M Goubran, S de Ribaupierre, RR Hammond… - Journal of neuroscience …, 2015 - Elsevier
Background Advances in MRI have the potential to improve surgical treatment of epilepsy
through improved identification and delineation of lesions. However, validation is currently …

Image registration of ex-vivo MRI to sparsely sectioned histology of hippocampal and neocortical temporal lobe specimens

M Goubran, C Crukley, S De Ribaupierre, TM Peters… - Neuroimage, 2013 - Elsevier
Intractable or drug-resistant epilepsy occurs in up to 30% of epilepsy patients, with many of
these patients undergoing surgical excision of the affected brain region to achieve seizure …

[HTML][HTML] Tensor image registration library: Deformable registration of stand‐alone histology images to whole‐brain post‐mortem MRI data

IN Huszar, M Pallebage-Gamarallage… - Neuroimage, 2023 - Elsevier
Background Accurate registration between microscopy and MRI data is necessary for
validating imaging biomarkers against neuropathology, and to disentangle complex signal …

Automated image registration: I. General methods and intrasubject, intramodality validation

RP Woods, ST Grafton, CJ Holmes… - Journal of computer …, 1998 - journals.lww.com
Purpose We sought to describe and validate an automated image registration method (AIR
3.0) based on matching of voxel intensities. Method Different cost functions, different …

Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections

JE Iglesias, M Modat, L Peter, A Stevens… - Medical image …, 2018 - Elsevier
Nonlinear registration of 2D histological sections with corresponding slices of MRI data is a
critical step of 3D histology reconstruction algorithms. This registration is difficult due to the …

PORTR: pre-operative and post-recurrence brain tumor registration

D Kwon, M Niethammer, H Akbari… - IEEE transactions on …, 2013 - ieeexplore.ieee.org
We propose a new method for deformable registration of pre-operative and post-recurrence
brain MR scans of glioma patients. Performing this type of intra-subject registration is …

Tensor image registration library: automated non-linear registration of sparsely sampled histological specimens to post-mortem MRI of the whole human brain

IN Huszar, M Pallebage-Gamarallage, S Foxley… - BioRxiv, 2019 - biorxiv.org
There is a need to understand the histopathological basis of MRI signal characteristics in
complex biological matter. Microstructural imaging holds promise for sensitive and specific …

Comparison and evaluation of retrospective intermodality brain image registration techniques

J West, JM Fitzpatrick, MY Wang… - Journal of computer …, 1997 - journals.lww.com
Purpose: The primary objective of this study is to perform a blinded evaluation of a group of
retrospective image registration techniques using as a gold standard a prospective, marker …

Registration of functional and anatomical MRI: accuracy assessment and application in navigated neurosurgery

T Rohlfing, JB West, J Beier, T Liebig… - Computer Aided …, 2000 - Taylor & Francis
Objective: A procedure for acquisition, automated registration, and fusion of functional and
anatomical magnetic resonance images is presented. Its accuracy is quantitatively assessed …

Consistency of parametric registration in serial MRI studies of brain tumor progression

A Mang, JA Schnabel, WR Crum, M Modat… - International Journal of …, 2008 - Springer
Object The consistency of parametric registration in multi-temporal magnetic resonance
(MR) imaging studies was evaluated. Materials and methods Serial MRI scans of adult …