DNA methylation QTL mapping across diverse human tissues provides molecular links between genetic variation and complex traits

M Oliva, K Demanelis, Y Lu, M Chernoff, F Jasmine… - Nature …, 2023 - nature.com
Studies of DNA methylation (DNAm) in solid human tissues are relatively scarce; tissue-
specific characterization of DNAm is needed to understand its role in gene regulation and its …

Genomic and phenotypic insights from an atlas of genetic effects on DNA methylation

JL Min, G Hemani, E Hannon, KF Dekkers… - Nature …, 2021 - nature.com
Characterizing genetic influences on DNA methylation (DNAm) provides an opportunity to
understand mechanisms underpinning gene regulation and disease. In the present study …

Genetic impacts on DNA methylation: research findings and future perspectives

S Villicaña, JT Bell - Genome biology, 2021 - Springer
Multiple recent studies highlight that genetic variants can have strong impacts on a
significant proportion of the human DNA methylome. Methylation quantitative trait loci, or …

Genetic variation influencing DNA methylation provides insights into molecular mechanisms regulating genomic function

JS Hawe, R Wilson, KT Schmid, L Zhou… - Nature …, 2022 - nature.com
We determined the relationships between DNA sequence variation and DNA methylation
using blood samples from 3,799 Europeans and 3,195 South Asians. We identify …

Human body epigenome maps reveal noncanonical DNA methylation variation

MD Schultz, Y He, JW Whitaker, M Hariharan… - Nature, 2015 - nature.com
Understanding the diversity of human tissues is fundamental to disease and requires linking
genetic information, which is identical in most of an individual's cells, with epigenetic …

High density methylation QTL analysis in human blood via next-generation sequencing of the methylated genomic DNA fraction

JL McClay, AA Shabalin, MG Dozmorov, DE Adkins… - Genome biology, 2015 - Springer
Background Genetic influence on DNA methylation is potentially an important mechanism
affecting individual differences in humans. We use next-generation sequencing to assay …

Methylation quantitative trait loci (meQTLs) are consistently detected across ancestry, developmental stage, and tissue type

AK Smith, V Kilaru, M Kocak, LM Almli, KB Mercer… - BMC genomics, 2014 - Springer
Background Individual genotypes at specific loci can result in different patterns of DNA
methylation. These methylation quantitative trait loci (meQTLs) influence methylation across …

[PDF][PDF] Leveraging DNA-methylation quantitative-trait loci to characterize the relationship between methylomic variation, gene expression, and complex traits

E Hannon, TJ Gorrie-Stone, MC Smart… - The American Journal of …, 2018 - cell.com
Characterizing the complex relationship between genetic, epigenetic, and transcriptomic
variation has the potential to increase understanding about the mechanisms underpinning …

DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

K Lokk, V Modhukur, B Rajashekar, K Märtens, R Mägi… - Genome biology, 2014 - Springer
Background DNA epigenetic modifications, such as methylation, are important regulators of
tissue differentiation, contributing to processes of both development and cancer. Profiling the …

[PDF][PDF] Pleiotropic effects of trait-associated genetic variation on DNA methylation: utility for refining GWAS loci

E Hannon, M Weedon, N Bray, M O'Donovan… - The American Journal of …, 2017 - cell.com
Most genetic variants identified in genome-wide association studies (GWASs) of complex
traits are thought to act by affecting gene regulation rather than directly altering the protein …