[HTML][HTML] Language models can learn complex molecular distributions

D Flam-Shepherd, K Zhu, A Aspuru-Guzik - Nature Communications, 2022 - nature.com
Deep generative models of molecules have grown immensely in popularity, trained on
relevant datasets, these models are used to search through chemical space. The …

MolGPT: molecular generation using a transformer-decoder model

V Bagal, R Aggarwal, PK Vinod… - Journal of Chemical …, 2021 - ACS Publications
Application of deep learning techniques for de novo generation of molecules, termed as
inverse molecular design, has been gaining enormous traction in drug design. The …

Chemical language models enable navigation in sparsely populated chemical space

MA Skinnider, RG Stacey, DS Wishart… - Nature Machine …, 2021 - nature.com
Deep generative models are powerful tools for the exploration of chemical space, enabling
the on-demand generation of molecules with desired physical, chemical or biological …

A model to search for synthesizable molecules

J Bradshaw, B Paige, MJ Kusner… - Advances in …, 2019 - proceedings.neurips.cc
Deep generative models are able to suggest new organic molecules by generating strings,
trees, and graphs representing their structure. While such models allow one to generate …

Comparative study of deep generative models on chemical space coverage

J Zhang, R Mercado, O Engkvist… - Journal of Chemical …, 2021 - ACS Publications
In recent years, deep molecular generative models have emerged as promising methods for
de novo molecular design. Thanks to the rapid advance of deep learning techniques, deep …

A deep generative model for fragment-based molecule generation

M Podda, D Bacciu, A Micheli - International conference on …, 2020 - proceedings.mlr.press
Molecule generation is a challenging open problem in cheminformatics. Currently, deep
generative approaches addressing the challenge belong to two broad categories, differing …

[HTML][HTML] Inverse design of 3d molecular structures with conditional generative neural networks

NWA Gebauer, M Gastegger, SSP Hessmann… - Nature …, 2022 - nature.com
The rational design of molecules with desired properties is a long-standing challenge in
chemistry. Generative neural networks have emerged as a powerful approach to sample …

[HTML][HTML] Chemical language models for de novo drug design: Challenges and opportunities

F Grisoni - Current Opinion in Structural Biology, 2023 - Elsevier
Generative deep learning is accelerating de novo drug design, by allowing the generation of
molecules with desired properties on demand. Chemical language models–which generate …

[HTML][HTML] Regression transformer enables concurrent sequence regression and generation for molecular language modelling

J Born, M Manica - Nature Machine Intelligence, 2023 - nature.com
Despite tremendous progress of generative models in the natural sciences, their
controllability remains challenging. One fundamentally missing aspect of molecular or …

[HTML][HTML] Deep generative models for peptide design

F Wan, D Kontogiorgos-Heintz… - Digital …, 2022 - pubs.rsc.org
Computers can already be programmed for superhuman pattern recognition of images and
text. For machines to discover novel molecules, they must first be trained to sort through the …