Large-scale integration of the non-coding RNAs with DNA methylation in human cancers

S Shen, J Chen, H Li, Y Jiang, Y Wei, R Zhang, Y Zhao… - Cell Reports, 2023 - cell.com
Characterizing influences of DNA methylation (DNAm) on non-coding RNAs (ncRNAs) is
important to understand the mechanisms of gene regulation and cancer outcome. In our …

Pan-cancer characterization of long non-coding RNA and DNA methylation mediated transcriptional dysregulation

Z Yang, F Xu, H Wang, AE Teschendorff, F Xie, Y He - EBioMedicine, 2021 - thelancet.com
Background Disruption of DNA methylation (DNAm) is one of the key signatures of cancer,
however, detailed mechanisms that alter the DNA methylome in cancer remain to be …

Discovering DNA methylation patterns for long non-coding RNAs associated with cancer subtypes

X Ma, L Yu, P Wang, X Yang - Computational biology and chemistry, 2017 - Elsevier
Despite growing evidence demonstrates that the long non-coding ribonucleic acids
(lncRNAs) are critical modulators for cancers, the knowledge about the DNA methylation …

[HTML][HTML] Pan-cancer analysis of the DNA methylation patterns of long non-coding RNA

S Wang, R Wang, F Gao, J Huang, X Zhao, D Li - Genomics, 2022 - Elsevier
Long non-coding RNA (lncRNA) regulated by abnormal DNA methylation (ADM-lncRNA)
emerges as a biomarker for cancer diagnosis and treatment. This study comprehensively …

Pan-cancer methylated dysregulation of long non-coding RNAs reveals epigenetic biomarkers

N Zhao, M Guo, C Zhang, C Wang… - Frontiers in Cell and …, 2022 - frontiersin.org
Different cancer types not only have common characteristics but also have their own
characteristics respectively. The mechanism of these specific and common characteristics is …

Genome-wide DNA methylome analysis reveals epigenetically dysregulated non-coding RNAs in human breast cancer

Y Li, Y Zhang, S Li, J Lu, J Chen, Y Wang, Y Li, J Xu… - Scientific reports, 2015 - nature.com
Despite growing appreciation of the importance of epigenetics in breast cancer, our
understanding of epigenetic alterations of non-coding RNAs (ncRNAs) in breast cancer …

DNMT1-associated long non-coding RNAs regulate global gene expression and DNA methylation in colon cancer

CR Merry, ME Forrest, JN Sabers… - Human molecular …, 2015 - academic.oup.com
The cancer epigenome exhibits global loss of DNA methylation, which contributes to
genomic instability and aberrant gene expression by mechanisms that are yet to be fully …

Genome-wide analysis of DNA methylation and their associations with long noncoding RNA/mRNA expression in non-small-cell lung cancer

N Feng, Y Wang, M Zheng, X Yu, H Lin, RN Ma… - …, 2017 - Taylor & Francis
Aim: The goal of this study is to identify differentially methylated (DM) loci associated with
long noncoding RNA (lncRNA)/mRNA expression in non-small-cell lung cancer (NSCLC) …

DNA methylation and gene expression profiles characterize epigenetic regulation of lncRNAs in colon adenocarcinoma

Z Li, H Tan, H Yu, Z Deng, X Zhou… - Journal of Cellular …, 2020 - Wiley Online Library
The long noncoding RNAs (lncRNAs) are associated with tumorigenesis and progression of
cancer. While DNA methylation is a common epigenetic regulator of gene expression, the …

Identification and functional annotation of lncRNA genes with hypermethylation in colorectal cancer

Q Liao, W He, J Liu, Y Cen, L Luo, C Yu, Y Li, S Chen… - Gene, 2015 - Elsevier
Colorectal cancer (CRC) is one of the leading causes of mortality worldwide. DNA
methylation is an important epigenetic modification for CRC. Although currently a number of …