A comprehensive overview of lncRNA annotation resources

J Xu, J Bai, X Zhang, Y Lv, Y Gong, L Liu… - Briefings in …, 2017 - academic.oup.com
Long noncoding RNAs (lncRNAs) are emerging as a class of important regulators
participating in various biological functions and disease processes. With the widespread …

AnnoLnc: a web server for systematically annotating novel human lncRNAs

M Hou, X Tang, F Tian, F Shi, F Liu, G Gao - BMC genomics, 2016 - Springer
Abstract Background Long noncoding RNAs (lncRNAs) have been shown to play essential
roles in almost every important biological process through multiple mechanisms. Although …

NONCODE v3. 0: integrative annotation of long noncoding RNAs

D Bu, K Yu, S Sun, C Xie, G Skogerbø… - Nucleic acids …, 2012 - academic.oup.com
Facilitated by the rapid progress of high-throughput sequencing technology, a large number
of long noncoding RNAs (lncRNAs) have been identified in mammalian transcriptomes over …

AnnoLnc2: the one-stop portal to systematically annotate novel lncRNAs for human and mouse

L Ke, DC Yang, Y Wang, Y Ding… - Nucleic acids research, 2020 - academic.oup.com
With the abundant mammalian lncRNAs identified recently, a comprehensive annotation
resource for these novel lncRNAs is an urgent need. Since its first release in November …

LncBook 2.0: integrating human long non-coding RNAs with multi-omics annotations

Z Li, L Liu, C Feng, Y Qin, J Xiao… - Nucleic Acids …, 2023 - academic.oup.com
LncBook, a comprehensive resource of human long non-coding RNAs (lncRNAs), has been
used in a wide range of lncRNA studies across various biological contexts. Here, we present …

lncRNAtor: a comprehensive resource for functional investigation of long non-coding RNAs

C Park, N Yu, I Choi, W Kim, S Lee - Bioinformatics, 2014 - academic.oup.com
Motivation: A number of long non-coding RNAs (lncRNAs) have been identified by deep
sequencing methods, but their molecular and cellular functions are known only for a limited …

Decoding LncRNAs

L Borkiewicz, J Kalafut, K Dudziak… - Cancers, 2021 - mdpi.com
Simple Summary Advances in RNA sequencing (RNA-seq) have led to the identification of
long non-coding RNAs (lncRNAs). Molecular studies on these molecules have shown that …

LncRBase: an enriched resource for lncRNA information

S Chakraborty, A Deb, RK Maji, S Saha, Z Ghosh - PloS one, 2014 - journals.plos.org
Long noncoding RNAs (lncRNAs) are noncoding transcripts longer than 200 nucleotides,
which show evidence of pervasive transcription and participate in a plethora of cellular …

Bioinformatics tools and novel challenges in long non-coding RNAs (lncRNAs) functional analysis

L Da Sacco, A Baldassarre, A Masotti - International journal of molecular …, 2011 - mdpi.com
The advent of next generation sequencing revealed that a fraction of transcribed RNAs
(short and long RNAs) is non-coding. Long non-coding RNAs (lncRNAs) have a crucial role …

An update on LNCipedia: a database for annotated human lncRNA sequences

PJ Volders, K Verheggen, G Menschaert… - Nucleic acids …, 2015 - academic.oup.com
The human genome is pervasively transcribed, producing thousands of non-coding RNA
transcripts. The majority of these transcripts are long non-coding RNAs (lncRNAs) and novel …