[HTML][HTML] A deep learning framework for high-throughput mechanism-driven phenotype compound screening and its application to COVID-19 drug repurposing

TH Pham, Y Qiu, J Zeng, L Xie, P Zhang - Nature machine intelligence, 2021 - nature.com
Phenotype-based compound screening has advantages over target-based drug discovery,
but is unscalable and lacks understanding of mechanism of drug action. A chemical-induced …

[HTML][HTML] Predicting potential SARS-COV-2 drugs—In depth drug database screening using deep neural network framework SSnet, classical virtual screening and …

N Karki, N Verma, F Trozzi, P Tao, E Kraka… - International Journal of …, 2021 - mdpi.com
Severe Acute Respiratory Syndrome Corona Virus 2 has altered life on a global scale. A
concerted effort from research labs around the world resulted in the identification of potential …

[HTML][HTML] A machine learning platform to estimate anti-SARS-CoV-2 activities

GB Kc, G Bocci, S Verma, MM Hassan… - Nature Machine …, 2021 - nature.com
Strategies for drug discovery and repositioning are urgently need with respect to COVID-19.
Here we present REDIAL-2020, a suite of computational models for estimating small …

Deep learning applications for predicting pharmacological properties of drugs and drug repurposing using transcriptomic data

A Aliper, S Plis, A Artemov, A Ulloa… - Molecular …, 2016 - ACS Publications
Deep learning is rapidly advancing many areas of science and technology with multiple
success stories in image, text, voice and video recognition, robotics, and autonomous …

Exploiting machine learning for end-to-end drug discovery and development

S Ekins, AC Puhl, KM Zorn, TR Lane, DP Russo… - Nature materials, 2019 - nature.com
A variety of machine learning methods such as naive Bayesian, support vector machines
and more recently deep neural networks are demonstrating their utility for drug discovery …

[HTML][HTML] Data-driven molecular design for discovery and synthesis of novel ligands: a case study on SARS-CoV-2

J Born, M Manica, J Cadow, G Markert… - Machine Learning …, 2021 - iopscience.iop.org
Bridging systems biology and drug design, we propose a deep learning framework for de
novo discovery of molecules tailored to bind with given protein targets. Our methodology is …

A transferable deep learning approach to fast screen potential antiviral drugs against SARS-CoV-2

S Wang, Q Sun, Y Xu, J Pei, L Lai - Briefings in Bioinformatics, 2021 - academic.oup.com
The COVID-19 pandemic calls for rapid development of effective treatments. Although
various drug repurpose approaches have been used to screen the FDA-approved drugs and …

Prediction of drug efficacy from transcriptional profiles with deep learning

J Zhu, J Wang, X Wang, M Gao, B Guo, M Gao… - Nature …, 2021 - nature.com
Drug discovery focused on target proteins has been a successful strategy, but many
diseases and biological processes lack obvious targets to enable such approaches. Here, to …

[HTML][HTML] Predicting novel drugs for SARS-CoV-2 using machine learning from a> 10 million chemical space

J Kowalewski, A Ray - Heliyon, 2020 - cell.com
There is an urgent need for the identification of effective therapeutics for COVID-19 and we
have developed a machine learning drug discovery pipeline to identify several drug …

[HTML][HTML] Accurate prediction of molecular properties and drug targets using a self-supervised image representation learning framework

X Zeng, H Xiang, L Yu, J Wang, K Li… - Nature Machine …, 2022 - nature.com
The clinical efficacy and safety of a drug is determined by its molecular properties and
targets in humans. However, proteome-wide evaluation of all compounds in humans, or …