Subcellular localization signals of bHLH-PAS proteins: Their significance, current state of knowledge and future perspectives

B Greb-Markiewicz, M Kolonko - International Journal of Molecular …, 2019 - mdpi.com
The bHLH-PAS (basic helix-loop-helix/Period-ARNT-Single minded) proteins are a family of
transcriptional regulators commonly occurring in living organisms. bHLH-PAS members act …

bHLH–PAS proteins: their structure and intrinsic disorder

M Kolonko, B Greb-Markiewicz - International journal of molecular …, 2019 - mdpi.com
The basic helix–loop–helix/Per-ARNT-SIM (bHLH–PAS) proteins are a class of
transcriptional regulators, commonly occurring in living organisms and highly conserved …

Computational identification of post‐translational modification‐based nuclear import regulations by characterizing nuclear localization signal‐import receptor …

JR Lin, Z Liu, J Hu - Proteins: Structure, Function, and …, 2014 - Wiley Online Library
The binding affinity between a nuclear localization signal (NLS) and its import receptor is
closely related to corresponding nuclear import activity. PTM‐based modulation of the NLS …

Extent of pre-translational regulation for the control of nucleocytoplasmic protein localization

MJ Luce, AA Akpawu, DC Tucunduva, S Mason… - BMC genomics, 2016 - Springer
Background Appropriate protein subcellular localization is essential for proper cellular
function. Central to the regulation of protein localization are protein targeting motifs …

NES-REBS: a novel nuclear export signal prediction method using regular expressions and biochemical properties

T Wu, X Wang, Z Zhang, F Gong, T Song… - … of bioinformatics and …, 2016 - World Scientific
A nuclear export signal (NES) is a protein localization signal, which is involved in binding of
cargo proteins to nuclear export receptor, thus contributes to regulate localization of cellular …

Identification of a common subnuclear localization signal

K Mekhail, L Rivero-Lopez, A Al-Masri… - Molecular biology of …, 2007 - Am Soc Cell Biol
Proteins share peptidic sequences, such as a nuclear localization signal (NLS), which guide
them to particular membrane-bound compartments. Similarities have also been observed …

Analysis and prediction of leucine-rich nuclear export signals

T La Cour, L Kiemer, A Mølgaard… - Protein Engineering …, 2004 - academic.oup.com
We present a thorough analysis of nuclear export signals and a prediction server, which we
have made publicly available. The machine learning prediction method is a significant …

[HTML][HTML] Recognition motifs for importin 4 [(L) PPRS (G/P) P] and importin 5 [KP (K/Y) LV] binding, identified by bio-informatic simulation and experimental in vitro …

AA Panagiotopoulos, K Kalyvianaki… - Computational and …, 2022 - Elsevier
Nuclear translocation of large proteins is mediated through karyopherins, carrier proteins
recognizing specific motifs of cargo proteins, known as nuclear localization signals (NLS) …

Phosphorylation in the accessory domain of yeast histone chaperone protein 1 exposes the nuclear export signal sequence

S Ashida, R Morita, Y Shigeta… - … : Structure, Function, and …, 2022 - Wiley Online Library
Histone chaperone proteins assist in the formation of the histone octamers, the scaffold
proteins that facilitate the packing of DNA into nucleosomes in the cell nucleus. One such …

[HTML][HTML] Comprehensive analysis of the dynamic structure of nuclear localization signals

R Yamagishi, T Okuyama, S Oba, J Shimada… - … and Biophysics Reports, 2015 - Elsevier
Most transcription and epigenetic factors in eukaryotic cells have nuclear localization signals
(NLSs) and are transported to the nucleus by nuclear transport proteins. Understanding the …