Multistep, automatic and nonrigid image registration method for histology samples acquired using multiple stains

M Wodzinski, A Skalski - Physics in Medicine & Biology, 2021 - iopscience.iop.org
The use of multiple dyes during histological sample preparation can reveal distinct tissue
properties. However, since the slide preparation differs for each dye, the tissue slides are …

ANHIR: automatic non-rigid histological image registration challenge

J Borovec, J Kybic, I Arganda-Carreras… - IEEE transactions on …, 2020 - ieeexplore.ieee.org
Automatic Non-rigid Histological Image Registration (ANHIR) challenge was organized to
compare the performance of image registration algorithms on several kinds of microscopy …

Comparison of consecutive and restained sections for image registration in histopathology

J Lotz, N Weiss, J van der Laak… - Journal of Medical …, 2023 - spiedigitallibrary.org
Significance Although the registration of restained sections allows nucleus-level alignment
that enables a direct analysis of interacting biomarkers, consecutive sections only allow the …

Unsupervised learning-based nonrigid registration of high resolution histology images

M Wodzinski, H Müller - Machine Learning in Medical Imaging: 11th …, 2020 - Springer
The use of different dyes during histological sample preparation reveals distinct tissue
properties and may improve the diagnosis. Nonetheless, the staining process deforms the …

Robust, fast and accurate: a 3-step method for automatic histological image registration

J Lotz, N Weiss, S Heldmann - arXiv preprint arXiv:1903.12063, 2019 - arxiv.org
We present a 3-step registration pipeline for differently stained histological serial sections
that consists of 1) a robust pre-alignment, 2) a parametric registration computed on coarse …

Automatic multi-stain registration of whole slide images in histopathology

A Shafique, M Babaie, M Sajadi… - 2021 43rd Annual …, 2021 - ieeexplore.ieee.org
Joint analysis of multiple biomarker images and tissue morphology is important for disease
diagnosis, treatment planning and drug development. It requires cross-staining comparison …

DeepHistReg: Unsupervised deep learning registration framework for differently stained histology samples

M Wodzinski, H Müller - Computer methods and programs in biomedicine, 2021 - Elsevier
Background and objective The use of several stains during histology sample preparation
can be useful for fusing complementary information about different tissue structures. It …

Unsupervised content classification based nonrigid registration of differently stained histology images

Y Song, D Treanor, AJ Bulpitt… - IEEE Transactions …, 2013 - ieeexplore.ieee.org
Registration of histopathology images of consecutive tissue sections stained with different
histochemical or immunohistochemical stains is an important step in a number of application …

Benchmarking of image registration methods for differently stained histological slides

J Borovec, A Munoz-Barrutia… - 2018 25th IEEE …, 2018 - ieeexplore.ieee.org
Image registration is a common task for many biomedical analysis applications. The present
work focuses on the benchmarking of registration methods on differently stained histological …

A hierarchical and multi-view registration of serial histopathological images

Z Chen, S Zhao, K Hu, J Han, Y Ji, S Ling… - Pattern Recognition …, 2021 - Elsevier
Serial histopathological images sliced from the same biopsy section exhibit quite similar
topological structures. They are usually stained with different dyes and inspected …