Abstract paml, currently in version 4, is a package of programs for phylogenetic analyses of
DNA and protein sequences using maximum likelihood (ML). The programs may be used to …

This note announces pamlX, a graphical user interface/front end for the paml (for
Phylogenetic Analysis by Maximum Likelihood) program package (Yang Z. 1997. PAML: a …

PAML, currently in version 1.2, is a package of programs for phylogenetic analyses of DNA
and protein sequences using the method of maximum likelihood (ML). The programs can be …

PAML is a package of programs for phylogenetic analyses of DNA or protein sequences
using maximum likelihood (ML). The PAML web page (h ttp://abacus. gene. ucl. ac …

Phylogenetic knowledge is indispensable in evolutionary biology, and molecular
phylogenetics has become an important tool in inferring phylogenetic relationships among …

The number of ways to infer phyloge? nies is large (Swofford et al., 1996) and get? ting
larger (eg, Largetand Simon, 1999). The proliferation of techniques poses a chal? lenge to …

These models are the basis of both maximum-likelihood (ML) and distance methods of
phylogenetic reconstruction. However, ML is the only method that permits statistical testing …

A biologically realistic method was used to simulate evolutionary trees. The method uses a
real DNA coding sequence as the starting point, simulates mutation according to the …

PHYML Online is a web interface to PHYML, a software that implements a fast and accurate
heuristic for estimating maximum likelihood phylogenies from DNA and protein sequences …

One of the strengths of the maximum likelihood method of phylogenetic estimation is the
ease with which hypotheses can be formulated and tested. Maximum likelihood analysis of …