[HTML][HTML] Engineered cell entry links receptor biology with single-cell genomics

B Yu, Q Shi, JA Belk, KE Yost, KR Parker, R Li, BB Liu… - Cell, 2022 - cell.com
Cells communicate with each other via receptor-ligand interactions. Here, we describe
lentiviral-mediated cell entry by engineered receptor-ligand interaction (ENTER) to display …

Antigen identification and high-throughput interaction mapping by reprogramming viral entry

CS Dobson, AN Reich, S Gaglione, BE Smith, EJ Kim… - Nature …, 2022 - nature.com
Deciphering immune recognition is critical for understanding a broad range of diseases and
for the development of effective vaccines and immunotherapies. Efforts to do so are limited …

Improved T cell receptor antigen pairing through data-driven filtering of sequencing information from single cells

HR Povlsen, AK Bentzen, M Kadivar, LE Jessen… - Elife, 2023 - elifesciences.org
Novel single-cell-based technologies hold the promise of matching T cell receptor (TCR)
sequences with their cognate peptide-MHC recognition motif in a high-throughput manner …

T-Scan: a genome-wide method for the systematic discovery of T cell epitopes

T Kula, MH Dezfulian, CI Wang, NS Abdelfattah… - Cell, 2019 - cell.com
T cell recognition of specific antigens mediates protection from pathogens and controls
neoplasias, but can also cause autoimmunity. Our knowledge of T cell antigens and their …

Post-translational covalent assembly of CAR and synNotch receptors for programmable antigen targeting

E Ruffo, AA Butchy, Y Tivon, V So, M Kvorjak… - Nature …, 2023 - nature.com
Chimeric antigen receptors (CARs) and synthetic Notch (synNotch) receptors are
engineered cell-surface receptors that sense a target antigen and respond by activating T …

Massively parallel interrogation and mining of natively paired human TCRαβ repertoires

MJ Spindler, AL Nelson, EK Wagner… - Nature …, 2020 - nature.com
T cells engineered to express antigen-specific T cell receptors (TCRs) are potent therapies
for viral infections and cancer. However, efficient identification of clinical candidate TCRs is …

Transcript-indexed ATAC-seq for precision immune profiling

AT Satpathy, N Saligrama, JD Buenrostro, Y Wei… - Nature medicine, 2018 - nature.com
T cells create vast amounts of diversity in the genes that encode their T cell receptors
(TCRs), which enables individual clones to recognize specific peptide–major …

CD8+ T cells utilize highly dynamic enhancer repertoires and regulatory circuitry in response to infections

B He, S Xing, C Chen, P Gao, L Teng, Q Shan… - Immunity, 2016 - cell.com
Differentiation of effector and memory CD8+ T cells is accompanied by extensive changes in
the transcriptome and histone modifications at gene promoters; however, the enhancer …

Shared and distinct biological circuits in effector, memory and exhausted CD8+ T cells revealed by temporal single-cell transcriptomics and epigenetics

JR Giles, SF Ngiow, S Manne, AE Baxter, O Khan… - Nature …, 2022 - nature.com
Naïve CD8+ T cells can differentiate into effector (Teff), memory (Tmem) or exhausted (Tex)
T cells. These developmental pathways are associated with distinct transcriptional and …

Tuning T cell receptor sensitivity through catch bond engineering

X Zhao, EM Kolawole, W Chan, Y Feng, X Yang… - Science, 2022 - science.org
Adoptive cell therapy using engineered T cell receptors (TCRs) is a promising approach for
targeting cancer antigens, but tumor-reactive TCRs are often weakly responsive to their …