Principles and applications of nucleic acid strand displacement reactions

FC Simmel, B Yurke, HR Singh - Chemical reviews, 2019 - ACS Publications
Dynamic DNA nanotechnology, a subfield of DNA nanotechnology, is concerned with the
study and application of nucleic acid strand-displacement reactions. Strand-displacement …

Control of DNA strand displacement kinetics using toehold exchange

DY Zhang, E Winfree - Journal of the American Chemical Society, 2009 - ACS Publications
DNA is increasingly being used as the engineering material of choice for the construction of
nanoscale circuits, structures, and motors. Many of these enzyme-free constructions function …

Modeling DNA-strand displacement reactions in the presence of base-pair mismatches

P Irmisch, TE Ouldridge, R Seidel - Journal of the American …, 2020 - ACS Publications
Toehold-mediated strand displacement is the most abundantly used method to achieve
dynamic switching in DNA-based nanotechnology. An “invader” strand binds to the “toehold” …

Dynamic DNA nanotechnology using strand-displacement reactions

DY Zhang, G Seelig - Nature chemistry, 2011 - nature.com
The specificity and predictability of Watson–Crick base pairing make DNA a powerful and
versatile material for engineering at the nanoscale. This has enabled the construction of a …

Strand displacement strategies for biosensor applications

Y Dai, A Furst, CC Liu - Trends in biotechnology, 2019 - cell.com
DNA has many unique properties beyond encoding genetic information, one of which is its
physicochemical stability based on Watson–Crick base pairing. Differences in sequence …

DNA strand displacement reaction: a powerful tool for discriminating single nucleotide variants

W Tang, W Zhong, Y Tan, GA Wang, F Li… - … : From Structure to …, 2020 - Springer
Single-nucleotide variants (SNVs) that are strongly associated with many genetic diseases
and tumors are important both biologically and clinically. Detection of SNVs holds great …

On the biophysics and kinetics of toehold-mediated DNA strand displacement

N Srinivas, TE Ouldridge, P Šulc… - Nucleic acids …, 2013 - academic.oup.com
Dynamic DNA nanotechnology often uses toehold-mediated strand displacement for
controlling reaction kinetics. Although the dependence of strand displacement kinetics on …

DNA branch migration reactions through photocontrollable toehold formation

F Huang, M You, D Han, X Xiong… - Journal of the …, 2013 - ACS Publications
Strand displacement cascades are commonly used to make dynamically assembled
structures. Particularly, the concept of “toehold-mediated DNA branch migration reactions” …

Robustness of localized DNA strand displacement cascades

M Teichmann, E Kopperger, FC Simmel - ACS nano, 2014 - ACS Publications
Colocalization can strongly alter the kinetics and efficiency of chemical processes. For
instance, in DNA-templated synthesis unfavorable reactions are sped up by placing …

Switchable reconfiguration of nucleic acid nanostructures by stimuli-responsive DNA machines

X Liu, CH Lu, I Willner - Accounts of Chemical Research, 2014 - ACS Publications
Conspectus The base sequence in DNA dictates structural and reactivity features of the
biopolymer. These properties are implemented to use DNA as a unique material for …