Highly accurate protein structure prediction for the human proteome

K Tunyasuvunakool, J Adler, Z Wu, T Green, M Zielinski… - Nature, 2021 - nature.com
Protein structures can provide invaluable information, both for reasoning about biological
processes and for enabling interventions such as structure-based drug development or …

AlphaFold2 and the future of structural biology

P Cramer - Nature structural & molecular biology, 2021 - nature.com
To the Editor—AlphaFold2 is a machine-learning algorithm for protein structure prediction
that has now been used to obtain hundreds of thousands of protein models. The resulting …

The impact of AlphaFold Protein Structure Database on the fields of life sciences

M Varadi, S Velankar - Proteomics, 2023 - Wiley Online Library
Arguably, 2020 was the year of high‐accuracy protein structure predictions, with AlphaFold
2.0 achieving previously unseen accuracy in the Critical Assessment of Protein Structure …

The structural coverage of the human proteome before and after AlphaFold

E Porta-Pardo, V Ruiz-Serra, S Valentini… - PLoS computational …, 2022 - journals.plos.org
The protein structure field is experiencing a revolution. From the increased throughput of
techniques to determine experimental structures, to developments such as cryo-EM that …

Classification of domains in predicted structures of the human proteome

RD Schaeffer, J Zhang, LN Kinch… - Proceedings of the …, 2023 - National Acad Sciences
Recent advances in protein structure prediction have generated accurate structures of
previously uncharacterized human proteins. Identifying domains in these predicted …

Toward high-resolution de novo structure prediction for small proteins

P Bradley, KMS Misura, D Baker - Science, 2005 - science.org
The prediction of protein structure from amino acid sequence is a grand challenge of
computational molecular biology. By using a combination of improved low-and high …

[HTML][HTML] Highly accurate protein structure prediction with AlphaFold

J Jumper, R Evans, A Pritzel, T Green, M Figurnov… - Nature, 2021 - nature.com
Proteins are essential to life, and understanding their structure can facilitate a mechanistic
understanding of their function. Through an enormous experimental effort 1, 2, 3, 4, the …

Improved protein structure prediction using potentials from deep learning

AW Senior, R Evans, J Jumper, J Kirkpatrick, L Sifre… - Nature, 2020 - nature.com
Protein structure prediction can be used to determine the three-dimensional shape of a
protein from its amino acid sequence. This problem is of fundamental importance as the …

[HTML][HTML] AlphaFold and implications for intrinsically disordered proteins

KM Ruff, RV Pappu - Journal of molecular biology, 2021 - Elsevier
Accurate predictions of the three-dimensional structures of proteins from their amino acid
sequences have come of age. AlphaFold, a deep learning-based approach to protein …

[HTML][HTML] Before and after AlphaFold2: An overview of protein structure prediction

LMF Bertoline, AN Lima, JE Krieger… - Frontiers in …, 2023 - frontiersin.org
Three-dimensional protein structure is directly correlated with its function and its
determination is critical to understanding biological processes and addressing human …