Defining cell types and states with single-cell genomics

C Trapnell - Genome research, 2015 - genome.cshlp.org
A revolution in cellular measurement technology is under way: For the first time, we have the
ability to monitor global gene regulation in thousands of individual cells in a single …

Using single‐cell genomics to understand developmental processes and cell fate decisions

JA Griffiths, A Scialdone, JC Marioni - Molecular systems biology, 2018 - embopress.org
High‐throughput‐omics techniques have revolutionised biology, allowing for thorough and
unbiased characterisation of the molecular states of biological systems. However, cellular …

Mapping human cell phenotypes to genotypes with single-cell genomics

JG Camp, R Platt, B Treutlein - Science, 2019 - science.org
The cumulative activity of all of the body's cells, with their myriad interactions, life histories,
and environmental experiences, gives rise to a condition that is distinctly human and specific …

The promise of single-cell sequencing

J Eberwine, JY Sul, T Bartfai, J Kim - Nature methods, 2014 - nature.com
Individual cells of the same phenotype are commonly viewed as identical functional units of
a tissue or organ. However, the deep sequencing of DNA and RNA from single cells …

[HTML][HTML] Challenges and emerging directions in single-cell analysis

GC Yuan, L Cai, M Elowitz, T Enver, G Fan, G Guo… - Genome biology, 2017 - Springer
Single-cell analysis is a rapidly evolving approach to characterize genome-scale molecular
information at the individual cell level. Development of single-cell technologies and …

Single-cell epigenomics: Recording the past and predicting the future

G Kelsey, O Stegle, W Reik - Science, 2017 - science.org
Single-cell multi-omics has recently emerged as a powerful technology by which different
layers of genomic output—and hence cell identity and function—can be recorded …

Revealing the vectors of cellular identity with single-cell genomics

A Wagner, A Regev, N Yosef - Nature biotechnology, 2016 - nature.com
Single-cell genomics has now made it possible to create a comprehensive atlas of human
cells. At the same time, it has reopened definitions of a cell's identity and of the ways in …

[HTML][HTML] Every cell is special: genome-wide studies add a new dimension to single-cell biology

JP Junker, A van Oudenaarden - Cell, 2014 - cell.com
Every Cell Is Special: Genome-wide Studies Add a New Dimension to Single-Cell Biology: Cell
Skip to Main Content Advertisement Cell This journal offers authors two options (open access …

[HTML][HTML] Single cell transcriptomics: methods and applications

I Kanter, T Kalisky - Frontiers in oncology, 2015 - frontiersin.org
Traditionally, gene expression measurements were performed on “bulk” samples containing
populations of thousands of cells. Recent advances in genomic technology have made it …

Scaling single-cell genomics from phenomenology to mechanism

A Tanay, A Regev - Nature, 2017 - nature.com
Three of the most fundamental questions in biology are how individual cells differentiate to
form tissues, how tissues function in a coordinated and flexible fashion and which gene …