[HTML][HTML] The Allele Catalog Tool: a web-based interactive tool for allele discovery and analysis
Background The advancement of sequencing technologies today has made a plethora of
whole-genome re-sequenced (WGRS) data publicly available. However, research utilizing …
whole-genome re-sequenced (WGRS) data publicly available. However, research utilizing …
Whole-genome resequencing: changing the paradigms of SNP detection, molecular mapping and gene discovery
X Xu, G Bai - Molecular breeding, 2015 - Springer
Next-generation sequencing (NGS) technologies open up a wealth of opportunities for plant
breeding and genomic research and change the paradigms of DNA marker detection …
breeding and genomic research and change the paradigms of DNA marker detection …
GWAS Atlas: an updated knowledgebase integrating more curated associations in plants and animals
X Liu, D Tian, C Li, B Tang, Z Wang… - Nucleic Acids …, 2023 - academic.oup.com
Abstract GWAS Atlas (https://ngdc. cncb. ac. cn/gwas/) is a manually curated resource of
genome-wide genotype-to-phenotype associations for a wide range of species. Here, we …
genome-wide genotype-to-phenotype associations for a wide range of species. Here, we …
[HTML][HTML] Evaluation of variant calling tools for large plant genome re-sequencing
Background Discovering single nucleotide polymorphisms (SNPs) from agriculture crop
genome sequences has been a widely used strategy for developing genetic markers for …
genome sequences has been a widely used strategy for developing genetic markers for …
[HTML][HTML] A comparison of genotyping-by-sequencing analysis methods on low-coverage crop datasets shows advantages of a new workflow, GB-eaSy
Background Genotyping-by-sequencing (GBS), a method to identify genetic variants and
quickly genotype samples, reduces genome complexity by using restriction enzymes to …
quickly genotype samples, reduces genome complexity by using restriction enzymes to …
[HTML][HTML] PGen: large-scale genomic variations analysis workflow and browser in SoyKB
Background With the advances in next-generation sequencing (NGS) technology and
significant reductions in sequencing costs, it is now possible to sequence large collections of …
significant reductions in sequencing costs, it is now possible to sequence large collections of …
[HTML][HTML] MaizeMine: a data mining warehouse for the maize genetics and genomics database
M Shamimuzzaman, JM Gardiner, AT Walsh… - Frontiers in Plant …, 2020 - frontiersin.org
MaizeMine is the data mining resource of the Maize Genetics and Genome Database
(MaizeGDB; http://maizemine. maizegdb. org). It enables researchers to create and export …
(MaizeGDB; http://maizemine. maizegdb. org). It enables researchers to create and export …
GDPC: connecting researchers with multiple integrated data sources
TM Casstevens, ES Buckler - Bioinformatics, 2004 - academic.oup.com
The goal of this project is to simplify access to genomic diversity and phenotype data,
thereby encouraging reuse of this data. The Genomic Diversity and Phenotype Connection …
thereby encouraging reuse of this data. The Genomic Diversity and Phenotype Connection …
Opportunity and challenges for whole‐genome resequencing‐based genotyping in plants
Genotyping techniques have been redesigned with the advent of next‐generation
sequencing technology, allowing for more effective genome mapping and analysis. Among …
sequencing technology, allowing for more effective genome mapping and analysis. Among …
[HTML][HTML] Development of a versatile resource for post-genomic research through consolidating and characterizing 1500 diverse wild and cultivated soybean genomes
Background With advances in next-generation sequencing technologies, an unprecedented
amount of soybean accessions has been sequenced by many individual studies and made …
amount of soybean accessions has been sequenced by many individual studies and made …