BEST: next-generation biomedical entity search tool for knowledge discovery from biomedical literature

S Lee, D Kim, K Lee, J Choi, S Kim, M Jeon, S Lim… - PloS one, 2016 - journals.plos.org
As the volume of publications rapidly increases, searching for relevant information from the
literature becomes more challenging. To complement standard search engines such as …

PubMed and beyond: biomedical literature search in the age of artificial intelligence

Q Jin, R Leaman, Z Lu - EBioMedicine, 2024 - thelancet.com
Biomedical research yields vast information, much of which is only accessible through the
literature. Consequently, literature search is crucial for healthcare and biomedicine. Recent …

[PDF][PDF] Life-inet: A structured network-based knowledge exploration and analytics system for life sciences

X Ren, J Shen, M Qu, X Wang, Z Wu… - Proceedings of ACL …, 2017 - aclanthology.org
Search engines running on scientific literature have been widely used by life scientists to
find publications related to their research. However, existing search engines in the life …

PubMed and beyond: a survey of web tools for searching biomedical literature

Z Lu - Database, 2011 - academic.oup.com
The past decade has witnessed the modern advances of high-throughput technology and
rapid growth of research capacity in producing large-scale biological data, both of which …

PubTator 3.0: an AI-powered literature resource for unlocking biomedical knowledge

CH Wei, A Allot, PT Lai, R Leaman, S Tian… - Nucleic Acids …, 2024 - academic.oup.com
Abstract PubTator 3.0 (https://www. ncbi. nlm. nih. gov/research/pubtator3/) is a biomedical
literature resource using state-of-the-art AI techniques to offer semantic and relation …

LitSuggest: a web-based system for literature recommendation and curation using machine learning

A Allot, K Lee, Q Chen, L Luo, Z Lu - Nucleic acids research, 2021 - academic.oup.com
Searching and reading relevant literature is a routine practice in biomedical research.
However, it is challenging for a user to design optimal search queries using all the keywords …

Best match: new relevance search for PubMed

N Fiorini, K Canese, G Starchenko, E Kireev, W Kim… - PLoS …, 2018 - journals.plos.org
PubMed is a free search engine for biomedical literature accessed by millions of users from
around the world each day. With the rapid growth of biomedical literature—about two articles …

Accessing biomedical literature in the current information landscape

R Khare, R Leaman, Z Lu - Biomedical literature mining, 2014 - Springer
Biomedical and life sciences literature is unique because of its exponentially increasing
volume and interdisciplinary nature. Biomedical literature access is essential for several …

Concept-based query expansion for retrieving gene related publications from MEDLINE

S Matos, JP Arrais, J Maia-Rodrigues, JL Oliveira - BMC bioinformatics, 2010 - Springer
Background Advances in biotechnology and in high-throughput methods for gene analysis
have contributed to an exponential increase in the number of scientific publications in these …

Anne O'Tate: A tool to support user-driven summarization, drill-down and browsing of PubMed search results

NR Smalheiser, W Zhou, VI Torvik - Journal of biomedical discovery and …, 2008 - Springer
Background PubMed is designed to provide rapid, comprehensive retrieval of papers that
discuss a given topic. However, because PubMed does not organize the search output …