CanSeer: A Method for Development and Clinical Translation of Personalized Cancer Therapeutics

RN Butt, B Amina, MU Sultan, ZB Tanveer, R Hussain… - bioRxiv, 2022 - biorxiv.org
Computational modeling and analysis of biomolecular network models annotated with
cancer patient-specific multi-omics data can enable the development of personalized …

Navigating multi-scale cancer systems biology towards model-driven clinical oncology and its applications in personalized therapeutics

MN Gondal, SU Chaudhary - Frontiers in Oncology, 2021 - frontiersin.org
Rapid advancements in high-throughput omics technologies and experimental protocols
have led to the generation of vast amounts of scale-specific biomolecular data on cancer …

Navigating Multi-scale Cancer Systems Biology towards Model-driven Personalized Therapeutics

MN Gondal, SU Chaudhary - bioRxiv, 2021 - biorxiv.org
Rapid advancements in high-throughput omics technologies and experimental protocols
have led to the generation of vast amounts of biomolecular data on cancer that now …

In silico signaling modeling to understand cancer pathways and treatment responses

M Kunz, J Jeromin, M Fuchs, J Christoph… - Briefings in …, 2020 - academic.oup.com
Precision medicine has changed thinking in cancer therapy, highlighting a better
understanding of the individual clinical interventions. But what role do the drivers and …

TISON: a next-generation multi-scale modeling theatre for in silico systems oncology

MN Gondal, MU Sultan, A Arif, A Rehman, HA Awan… - BioRxiv, 2021 - biorxiv.org
Multi-scale models integrating biomolecular data from genetic, transcriptional, and
translational levels, coupled with extracellular microenvironments can assist in decoding the …

Systems biology and personalized medicine in cancer

K Mani - Current Pharmacogenomics and Personalized …, 2010 - ingentaconnect.com
Cancer is a heterogeneous disease, originating in different tissues and involving a number
of distinct molecular pathways. With the growing availability of high-throughput biological …

Using network biology to bridge pharmacokinetics and pharmacodynamics in oncology

DC Kirouac, MD Onsum - CPT: pharmacometrics & systems …, 2013 - Wiley Online Library
If mathematical modeling is to be used effectively in cancer drug development, future models
must take into account both the mechanistic details of cellular signal transduction networks …

Integrative modeling of multi-omics data to identify cancer drivers and infer patient-specific gene activity

AB Pavel, D Sonkin, A Reddy - BMC Systems Biology, 2016 - Springer
Background High throughput technologies have been used to profile genes in multiple
different dimensions, such as genetic variation, copy number, gene and protein expression …

Using pharmacogenomic databases for discovering patient-target genes and small molecule candidates to cancer therapy

JE Belizário, BA Sangiuliano, M Perez-Sosa… - Frontiers in …, 2016 - frontiersin.org
With multiple omics strategies being applied to several cancer genomics projects,
researchers have the opportunity to develop a rational planning of targeted cancer therapy …

Efficient parameterization of large-scale mechanistic models enables drug response prediction for cancer cell lines

F Fröhlich, T Kessler, D Weindl, A Shadrin… - bioRxiv, 2017 - biorxiv.org
The response of cancer cells to drugs is determined by various factors, including the cells'
mutations and gene expression levels. These factors can be assessed using next …