The assay for transposase-accessible chromatin using sequencing (ATAC-seq) provides a
simple and scalable way to detect the unique chromatin landscape associated with a cell …

Abstract Assay of Transposase Accessible Chromatin sequencing (ATAC-seq) is widely
used in studying chromatin biology, but a comprehensive review of the analysis tools has …

Background Chromatin accessibility is crucial for gene expression regulation in specific cells
and in multiple biological processes. Assay for Transposase Accessible Chromatin with high …

Background Recent innovations in single-cell Assay for Transposase Accessible Chromatin
using sequencing (scATAC-seq) enable profiling of the epigenetic landscape of thousands …

Background ATAC-seq (Assays for Transposase-Accessible Chromatin using sequencing)
is a recently developed technique for genome-wide analysis of chromatin accessibility …

Profiling chromatin accessibility at the single-cell level provides critical information about cell
type composition and cell-to-cell variation within a complex tissue. Emerging techniques for …

We describe an assay for transposase-accessible chromatin using sequencing (ATAC-seq),
based on direct in vitro transposition of sequencing adaptors into native chromatin, as a …

Abstract The Assay for Transposase-Accessible Chromatin using sequencing (ATAC-seq) is
a fundamental epigenomics approach and has been widely used in profiling the chromatin …

Recent technological advances have enabled massively parallel chromatin profiling with
scATAC-seq (single-cell assay for transposase accessible chromatin by sequencing). Here …

As chromatin accessibility data from ATAC-seq experiments continues to expand, there is
continuing need for standardized analysis pipelines. Here, we present PEPATAC, an ATAC …