The implications of human metabolic network topology for disease comorbidity

DS Lee, J Park, KA Kay, NA Christakis… - Proceedings of the …, 2008 - National Acad Sciences
Most diseases are the consequence of the breakdown of cellular processes, but the
relationships among genetic/epigenetic defects, the molecular interaction networks …

Network biology concepts in complex disease comorbidities

JX Hu, CE Thomas, S Brunak - Nature Reviews Genetics, 2016 - nature.com
The co-occurrence of diseases can inform the underlying network biology of shared and
multifunctional genes and pathways. In addition, comorbidities help to elucidate the effects …

[HTML][HTML] Network medicine approaches to the genetics of complex diseases

EK Silverman, J Loscalzo - Discovery medicine, 2012 - ncbi.nlm.nih.gov
Complex diseases are caused by perturbations of biological networks. Genetic analysis
approaches focused on individual genetic determinants are unlikely to characterize the …

Global reconstruction of the human metabolic network based on genomic and bibliomic data

NC Duarte, SA Becker, N Jamshidi… - Proceedings of the …, 2007 - National Acad Sciences
Metabolism is a vital cellular process, and its malfunction is a major contributor to human
disease. Metabolic networks are complex and highly interconnected, and thus systems-level …

Gene-disease network analysis reveals functional modules in mendelian, complex and environmental diseases

A Bauer-Mehren, M Bundschus, M Rautschka… - PloS one, 2011 - journals.plos.org
Background Scientists have been trying to understand the molecular mechanisms of
diseases to design preventive and therapeutic strategies for a long time. For some diseases …

A dynamic network approach for the study of human phenotypes

CA Hidalgo, N Blumm, AL Barabási… - PLoS computational …, 2009 - journals.plos.org
The use of networks to integrate different genetic, proteomic, and metabolic datasets has
been proposed as a viable path toward elucidating the origins of specific diseases. Here we …

Using the reconstructed genome‐scale human metabolic network to study physiology and pathology

A Bordbar, BO Palsson - Journal of internal medicine, 2012 - Wiley Online Library
Bordbar A, Palsson BO (University of California San Diego, La Jolla, CA, USA). Using the
reconstructed genome‐scale human metabolic network to study physiology and pathology …

The Edinburgh human metabolic network reconstruction and its functional analysis

H Ma, A Sorokin, A Mazein, A Selkov… - Molecular systems …, 2007 - embopress.org
A better understanding of human metabolism and its relationship with diseases is an
important task in human systems biology studies. In this paper, we present a high‐quality …

Meneco, a topology-based gap-filling tool applicable to degraded genome-wide metabolic networks

S Prigent, C Frioux, SM Dittami, S Thiele… - PLoS computational …, 2017 - journals.plos.org
Increasing amounts of sequence data are becoming available for a wide range of non-
model organisms. Investigating and modelling the metabolic behaviour of those organisms …

Tissue specificity of human disease module

M Kitsak, A Sharma, J Menche, E Guney… - Scientific reports, 2016 - nature.com
Genes carrying mutations associated with genetic diseases are present in all human cells;
yet, clinical manifestations of genetic diseases are usually highly tissue-specific. Although …