CGmapTools improves the precision of heterozygous SNV calls and supports allele-specific methylation detection and visualization in bisulfite-sequencing data
Motivation DNA methylation is important for gene silencing and imprinting in both plants and
animals. Recent advances in bisulfite sequencing allow detection of single nucleotide …
animals. Recent advances in bisulfite sequencing allow detection of single nucleotide …
Detection of DNA methylation by whole-genome bisulfite sequencing
Q Li, PJ Hermanson, NM Springer - Maize: Methods and Protocols, 2018 - Springer
DNA methylation plays an important role in the regulation of the expression of transposons
and genes. Various methods have been developed to assay DNA methylation levels …
and genes. Various methods have been developed to assay DNA methylation levels …
Bis-SNP: combined DNA methylation and SNP calling for Bisulfite-seq data
Bisulfite treatment of DNA followed by high-throughput sequencing (Bisulfite-seq) is an
important method for studying DNA methylation and epigenetic gene regulation, yet current …
important method for studying DNA methylation and epigenetic gene regulation, yet current …
An integrated package for bisulfite DNA methylation data analysis with Indel-sensitive mapping
Background DNA methylation plays crucial roles in most eukaryotic organisms. Bisulfite
sequencing (BS-Seq) is a sequencing approach that provides quantitative cytosine …
sequencing (BS-Seq) is a sequencing approach that provides quantitative cytosine …
Kismeth: analyzer of plant methylation states through bisulfite sequencing
E Gruntman, Y Qi, RK Slotkin, T Roeder… - BMC …, 2008 - Springer
Background There is great interest in probing the temporal and spatial patterns of cytosine
methylation states in genomes of a variety of organisms. It is hoped that this will shed light …
methylation states in genomes of a variety of organisms. It is hoped that this will shed light …
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
DNA methylation is an important epigenetic modification involved in gene regulation, which
can now be measured using whole-genome bisulfite sequencing. However, cost, complexity …
can now be measured using whole-genome bisulfite sequencing. However, cost, complexity …
[HTML][HTML] MethylExtract: high-quality methylation maps and SNV calling from whole genome bisulfite sequencing data
Whole genome methylation profiling at a single cytosine resolution is now feasible due to
the advent of high-throughput sequencing techniques together with bisulfite treatment of the …
the advent of high-throughput sequencing techniques together with bisulfite treatment of the …
BS-SNPer: SNP calling in bisulfite-seq data
S Gao, D Zou, L Mao, H Liu, P Song, Y Chen… - …, 2015 - academic.oup.com
Sodium bisulfite conversion followed by sequencing (BS-Seq, such as whole genome
bisulfite sequencing or reduced representation bisulfite sequencing) has become popular …
bisulfite sequencing or reduced representation bisulfite sequencing) has become popular …
Amplification-free whole-genome bisulfite sequencing by post-bisulfite adaptor tagging
F Miura, Y Enomoto, R Dairiki, T Ito - Nucleic acids research, 2012 - academic.oup.com
DNA methylation plays a key role in epigenetic regulation of eukaryotic genomes. Hence the
genome-wide distribution of 5-methylcytosine, or the methylome, has been attracting intense …
genome-wide distribution of 5-methylcytosine, or the methylome, has been attracting intense …
swDMR: a sliding window approach to identify differentially methylated regions based on whole genome bisulfite sequencing
DNA methylation is a widespread epigenetic modification that plays an essential role in
gene expression through transcriptional regulation and chromatin remodeling. The …
gene expression through transcriptional regulation and chromatin remodeling. The …