SARS-CoV-2 evolution in the Omicron era

C Roemer, DJ Sheward, R Hisner, F Gueli… - Nature …, 2023 - nature.com
Abstract Since SARS-CoV-2 BA. 5 (Omicron) emerged and spread in 2022, Omicron
lineages have markedly diversified. Here we review the evolutionary trajectories and …

[HTML][HTML] Antigenic evolution will lead to new SARS-CoV-2 variants with unpredictable severity

PV Markov, A Katzourakis, NI Stilianakis - Nature Reviews Microbiology, 2022 - nature.com
The comparatively milder infections with the Omicron variant and higher levels of population
immunity have raised hopes for a weakening of the pandemic. We argue that the lower …

[HTML][HTML] Emerging SARS-CoV-2 variants: Why, how, and what's next?

Y Chen, Q Liu, L Zhou, Y Zhou, H Yan, K Lan - Cell Insight, 2022 - Elsevier
The emergence of the SARS-CoV-2 Omicron variant poses a striking threat to human
society. More than 30 mutations in the Spike protein of the Omicron variant severely …

[HTML][HTML] Distinct evolution of SARS-CoV-2 Omicron XBB and BA. 2.86/JN. 1 lineages combining increased fitness and antibody evasion

D Planas, I Staropoli, V Michel, F Lemoine… - Nature …, 2024 - nature.com
The unceasing circulation of SARS-CoV-2 leads to the continuous emergence of novel viral
sublineages. Here, we isolate and characterize XBB. 1, XBB. 1.5, XBB. 1.9. 1, XBB. 1.16. 1 …

[HTML][HTML] The remarkable evolutionary plasticity of coronaviruses by mutation and recombination: insights for the COVID-19 pandemic and the future evolutionary paths …

GD Amoutzias, M Nikolaidis, E Tryfonopoulou… - Viruses, 2022 - mdpi.com
Coronaviruses (CoVs) constitute a large and diverse subfamily of positive-sense single-
stranded RNA viruses. They are found in many mammals and birds and have great …

The origins and molecular evolution of SARS-CoV-2 lineage B. 1.1. 7 in the UK

V Hill, L Du Plessis, TP Peacock, D Aggarwal… - Virus …, 2022 - academic.oup.com
The first SARS-CoV-2 variant of concern (VOC) to be designated was lineage B. 1.1. 7, later
labelled by the World Health Organization as Alpha. Originating in early autumn but …

Occurrence and significance of Omicron BA. 1 infection followed by BA. 2 reinfection

M Stegger, SM Edslev, RN Sieber, A Cäcilia Ingham… - MedRxiv, 2022 - medrxiv.org
The newly found Omicron SARS-CoV-2 variant of concern has rapidly spread worldwide.
Omicron carries numerous mutations in key regions and is associated with increased …

[HTML][HTML] The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages

DP Martin, S Weaver, H Tegally, JE San, SD Shank… - Cell, 2021 - cell.com
The independent emergence late in 2020 of the B. 1.1. 7, B. 1.351, and P. 1 lineages of
SARS-CoV-2 prompted renewed concerns about the evolutionary capacity of this virus to …

[HTML][HTML] Characterization of SARS-CoV-2 recombinants and emerging Omicron sublineages

Y Wang, Y Long, F Wang, C Li, W Liu - International journal of …, 2023 - ncbi.nlm.nih.gov
Abstract The SARS-CoV-2 Omicron is currently the predominant circulating variant in the
COVID-19 pandemic. The dominating Omicron sublineages respond to host immune …

[HTML][HTML] Convergent evolution of SARS-CoV-2 Omicron subvariants leading to the emergence of BQ. 1.1 variant

J Ito, R Suzuki, K Uriu, Y Itakura, J Zahradnik… - Nature …, 2023 - nature.com
In late 2022, various Omicron subvariants emerged and cocirculated worldwide. These
variants convergently acquired amino acid substitutions at critical residues in the spike …