Evaluation of NGS-based approaches for SARS-CoV-2 whole genome characterisation
C Charre, C Ginevra, M Sabatier, H Regue… - Virus …, 2020 - academic.oup.com
Since the beginning of the COVID-19 outbreak, SARS-CoV-2 whole-genome sequencing
(WGS) has been performed at unprecedented rate worldwide with the use of very diverse …
(WGS) has been performed at unprecedented rate worldwide with the use of very diverse …
A benchmarking study of SARS-CoV-2 whole-genome sequencing protocols using COVID-19 patient samples
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is an emerging new type of
coronavirus that is responsible for the COVID-19 pandemic and the unprecedented global …
coronavirus that is responsible for the COVID-19 pandemic and the unprecedented global …
Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples
M Xiao, X Liu, J Ji, M Li, J Li, L Yang, W Sun, P Ren… - Genome medicine, 2020 - Springer
Abstract Background COVID-19 (coronavirus disease 2019) has caused a major epidemic
worldwide; however, much is yet to be known about the epidemiology and evolution of the …
worldwide; however, much is yet to be known about the epidemiology and evolution of the …
Whole genome sequencing of SARS-CoV-2: adapting Illumina protocols for quick and accurate outbreak investigation during a pandemic
S Pillay, J Giandhari, H Tegally, E Wilkinson… - Genes, 2020 - mdpi.com
The COVID-19 pandemic has spread very fast around the world. A few days after the first
detected case in South Africa, an infection started in a large hospital outbreak in Durban …
detected case in South Africa, an infection started in a large hospital outbreak in Durban …
A comparison of whole genome sequencing of SARS-CoV-2 using amplicon-based sequencing, random hexamers, and bait capture
JA Nasir, RA Kozak, P Aftanas, AR Raphenya… - Viruses, 2020 - mdpi.com
Genome sequencing of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is
increasingly important to monitor the transmission and adaptive evolution of the virus. The …
increasingly important to monitor the transmission and adaptive evolution of the virus. The …
[HTML][HTML] Improvements to the ARTIC multiplex PCR method for SARS-CoV-2 genome sequencing using nanopore
JR Tyson, P James, D Stoddart, N Sparks… - BioRxiv, 2020 - ncbi.nlm.nih.gov
Genome sequencing has been widely deployed to study the evolution of SARS-CoV-2 with
more than 90,000 genome sequences uploaded to the GISAID database. We published a …
more than 90,000 genome sequences uploaded to the GISAID database. We published a …
CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes
We present CoronaHiT, a platform and throughput flexible method for sequencing SARS-
CoV-2 genomes (≤ 96 on MinION or> 96 on Illumina NextSeq) depending on changing …
CoV-2 genomes (≤ 96 on MinION or> 96 on Illumina NextSeq) depending on changing …
Sensitive recovery of complete SARS-CoV-2 genomes from clinical samples by use of Swift Biosciences' SARS-CoV-2 multiplex amplicon sequencing panel
Whole-genome sequencing (WGS) of severe acute respiratory syndrome coronavi-rus 2
(SARS-CoV-2) has led to a better understanding of the virus's origin, transmission, and …
(SARS-CoV-2) has led to a better understanding of the virus's origin, transmission, and …
Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis
Viral whole-genome sequencing (WGS) provides critical insight into the transmission and
evolution of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Long-read …
evolution of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Long-read …
Rapid and inexpensive whole-genome sequencing of SARS-CoV-2 using 1200 bp tiled amplicons and Oxford Nanopore Rapid Barcoding
Rapid and cost-efficient whole-genome sequencing of severe acute respiratory syndrome
coronavirus 2 (SARS-CoV-2), the virus that causes coronavirus disease 2019, is critical for …
coronavirus 2 (SARS-CoV-2), the virus that causes coronavirus disease 2019, is critical for …