[HTML][HTML] Comparing the significance of the utilization of next generation and third generation sequencing technologies in microbial metagenomics

I Akacin, Ş Ersoy, O Doluca, M Güngörmüşler - Microbiological Research, 2022 - Elsevier
Since the exploration of sequencing began in 2005, third and next-generation sequencing
(TGS and NGS) technologies have fundamentally changed metagenomics research. These …

Benchmarking second and third-generation sequencing platforms for microbial metagenomics

V Meslier, B Quinquis, K Da Silva, F Plaza Oñate… - Scientific Data, 2022 - nature.com
Shotgun metagenomic sequencing is a common approach for studying the taxonomic
diversity and metabolic potential of complex microbial communities. Current methods …

Future potential of metagenomics in microbiology laboratories

L Schuele, H Cassidy, N Peker… - Expert review of …, 2021 - Taylor & Francis
Rapid and sensitive diagnostic strategies are necessary for patient care and public health.
Most of the current conventional microbiological assays detect only a restricted panel of …

Metagenomics: the next culture-independent game changer

JD Forbes, NC Knox, J Ronholm, F Pagotto… - Frontiers in …, 2017 - frontiersin.org
A trend towards the abandonment of obtaining pure culture isolates in frontline laboratories
is at a crossroads with the ability of public health agencies to perform their basic mandate of …

[HTML][HTML] Multilaboratory assessment of metagenomic next-generation sequencing for unbiased microbe detection

D Han, Z Diao, H Lai, Y Han, J Xie, R Zhang… - Journal of Advanced …, 2022 - Elsevier
Introduction Metagenomic next-generation sequencing (mNGS) assay for detecting
infectious agents is now in the stage of being translated into clinical practice. With no …

A review on the applications of next generation sequencing technologies as applied to food-related microbiome studies

Y Cao, S Fanning, S Proos, K Jordan… - Frontiers in …, 2017 - frontiersin.org
The development of next generation sequencing (NGS) techniques has enabled
researchers to study and understand the world of microorganisms from broader and deeper …

Unraveling metagenomics through long-read sequencing: A comprehensive review

C Kim, M Pongpanich, T Porntaveetus - Journal of Translational Medicine, 2024 - Springer
The study of microbial communities has undergone significant advancements, starting from
the initial use of 16S rRNA sequencing to the adoption of shotgun metagenomics. However …

Genomics and metagenomics in medical microbiology

R Padmanabhan, AK Mishra, D Raoult… - Journal of microbiological …, 2013 - Elsevier
Over the last two decades, sequencing tools have evolved from laborious time-consuming
methodologies to real-time detection and deciphering of genomic DNA. Genome …

[PDF][PDF] Microbial ecology in the era of next generation sequencing

S De Mandal, AK Panda, SS Bisht… - Next Generat Sequenc & …, 2015 - researchgate.net
Microorganisms are the major part of earth's biological diversity. Due to most of the microbes
being nonculturable, it is necessary to use culture independent techniques to study the …

High‐throughput metagenomics for identification of pathogens in the clinical settings

N Li, Q Cai, Q Miao, Z Song, Y Fang, B Hu - Small methods, 2021 - Wiley Online Library
The application of sequencing technology is shifting from research to clinical laboratories
owing to rapid technological developments and substantially reduced costs. However …