Characterizing cis-regulatory elements using single-cell epigenomics

S Preissl, KJ Gaulton, B Ren - Nature Reviews Genetics, 2023 - nature.com
Cell type-specific gene expression patterns and dynamics during development or in disease
are controlled by cis-regulatory elements (CREs), such as promoters and enhancers …

[HTML][HTML] Single-cell epigenomics: powerful new methods for understanding gene regulation and cell identity

SJ Clark, HJ Lee, SA Smallwood, G Kelsey, W Reik - Genome biology, 2016 - Springer
Emerging single-cell epigenomic methods are being developed with the exciting potential to
transform our knowledge of gene regulation. Here we review available techniques and …

[HTML][HTML] The International Human Epigenome Consortium: a blueprint for scientific collaboration and discovery

HG Stunnenberg, S Abrignani, D Adams, M de Almeida… - Cell, 2016 - cell.com
The International Human Epigenome Consortium (IHEC) coordinates the generation of a
catalog of high-resolution reference epigenomes of major primary human cell types. The …

Single-cell epigenomics: techniques and emerging applications

O Schwartzman, A Tanay - Nature Reviews Genetics, 2015 - nature.com
Epigenomics is the study of the physical modifications, associations and conformations of
genomic DNA sequences, with the aim of linking these with epigenetic memory, cellular …

[HTML][HTML] Massively parallel characterization of transcriptional regulatory elements in three diverse human cell types

V Agarwal, F Inoue, M Schubach, BK Martin, PM Dash… - bioRxiv, 2023 - ncbi.nlm.nih.gov
The human genome contains millions of candidate cis-regulatory elements (CREs) with cell-
type-specific activities that shape both health and myriad disease states. However, we lack a …

Epigenetics: judge, jury and executioner of stem cell fate

JR Tollervey, VV Lunyak - Epigenetics, 2012 - Taylor & Francis
Emerging evidence is shedding light on a large and complex network of epigenetic
modifications at play in human stem cells. This “epigenetic landscape” governs the fine …

Interpreting non-coding disease-associated human variants using single-cell epigenomics

KJ Gaulton, S Preissl, B Ren - Nature Reviews Genetics, 2023 - nature.com
Genome-wide association studies (GWAS) have linked hundreds of thousands of sequence
variants in the human genome to common traits and diseases. However, translating this …

Epigenetic biomarker development

C Bock - Epigenomics, 2009 - Future Medicine
Epigenetic mechanisms control gene expression in a way that is stably propagated over
multiple cell divisions, but which is also flexible enough to respond to environmental …

[PDF][PDF] eFORGE: a tool for identifying cell type-specific signal in epigenomic data

CE Breeze, DS Paul, J van Dongen, LM Butcher… - Cell reports, 2016 - cell.com
Epigenome-wide association studies (EWAS) provide an alternative approach for studying
human disease through consideration of non-genetic variants such as altered DNA …

[HTML][HTML] Epigenetic signatures in cancer: proper controls, current challenges and the potential for clinical translation

D Mancarella, C Plass - Genome medicine, 2021 - Springer
Epigenetic alterations are associated with normal biological processes such as aging or
differentiation. Changes in global epigenetic signatures, together with genetic alterations …