Transcriptional profiling using RNA sequencing (RNAseq) has emerged as a powerful methodology to quantify global gene expression patterns in various contexts from single …
Background With the cost of DNA sequencing decreasing, increasing amounts of RNA-Seq data are being generated giving novel insight into gene expression and regulation. Prior to …
A visualization suite for major forms of bulk and single-cell RNAseq data in R. dittoSeq is color blindness-friendly by default, robustly documented to power ease-of-use and allows …
RaNA-Seq is a cloud platform for the rapid analysis and visualization of RNA-Seq data. It performs a full analysis in minutes by quantifying FASTQ files, calculating quality control …
Ribonucleic acid sequencing (RNA-seq) identifies and quantifies RNA molecules from a biological sample. Transformation from raw sequencing data to meaningful gene or isoform …
O Graña, M Rubio-Camarillo… - Current …, 2018 - ingentaconnect.com
Background: Many bioinformatics pipelines are available nowadays to analyze transcriptomics data produced by high-throughput RNA sequencing. They implement …
S Orjuela, R Huang, KM Hembach… - G3: Genes …, 2019 - academic.oup.com
The extensive generation of RNA sequencing (RNA-seq) data in the last decade has resulted in a myriad of specialized software for its analysis. Each software module typically …
F Ji, RI Sadreyev - Current protocols in molecular biology, 2018 - Wiley Online Library
Quantitative analysis of gene expression is crucial for understanding the molecular mechanisms underlying genome regulation. RNA‐seq is a powerful platform for …
S Sun, L Xu, Q Zou, G Wang - Bioinformatics, 2021 - academic.oup.com
Processing raw reads of RNA-sequencing (RNA-seq) data, no matter public or newly sequenced data, involves a lot of specialized tools and technical configurations that are …