GUIDANCE: a web server for assessing alignment confidence scores
Evaluating the accuracy of multiple sequence alignment (MSA) is critical for virtually every
comparative sequence analysis that uses an MSA as input. Here we present the GUIDANCE …
comparative sequence analysis that uses an MSA as input. Here we present the GUIDANCE …
Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment
T Lassmann, ELL Sonnhammer - Nucleic acids research, 2006 - academic.oup.com
Obtaining high quality multiple alignments is crucial for a range of sequence analysis tasks.
A common strategy is to align the sequences several times, varying the program or …
A common strategy is to align the sequences several times, varying the program or …
GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters
Inference of multiple sequence alignments (MSAs) is a critical part of phylogenetic and
comparative genomics studies. However, from the same set of sequences different MSAs …
comparative genomics studies. However, from the same set of sequences different MSAs …
Heads or tails: a simple reliability check for multiple sequence alignments
The question of multiple sequence alignment quality has received much attention from
developers of alignment methods. Less forthcoming, however, are practical measures for …
developers of alignment methods. Less forthcoming, however, are practical measures for …
The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods
The M-Coffee server is a web server that makes it possible to compute multiple sequence
alignments (MSAs) by running several MSA methods and combining their output into one …
alignments (MSAs) by running several MSA methods and combining their output into one …
Tcoffee@ igs: a web server for computing, evaluating and combining multiple sequence alignments
O Poirot, E O'Toole, C Notredame - Nucleic acids research, 2003 - academic.oup.com
This paper presents Tcoffee@ igs, a new server provided to the community by Hewlet
Packard computers and the Centre National de la Recherche Scientifique. This server is a …
Packard computers and the Centre National de la Recherche Scientifique. This server is a …
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
JD Thompson, TJ Gibson, F Plewniak… - Nucleic acids …, 1997 - academic.oup.com
CLUSTAL X is a new windows interface for the widely-used progressive multiple sequence
alignment program CLUSTAL W. The new system is easy to use, providing an integrated …
alignment program CLUSTAL W. The new system is easy to use, providing an integrated …
[PDF][PDF] A simple genetic algorithm for multiple sequence alignment
C Gondro, BP Kinghorn - Genetics and Molecular Research, 2007 - funpecrp.com.br
Multiple sequence alignment plays an important role in molecular sequence analysis. An
alignment is the arrangement of two (pairwise alignment) or more (multiple alignment) …
alignment is the arrangement of two (pairwise alignment) or more (multiple alignment) …
Assessing the efficiency of multiple sequence alignment programs
Background Multiple sequence alignment (MSA) is an extremely useful tool for molecular
and evolutionary biology and there are several programs and algorithms available for this …
and evolutionary biology and there are several programs and algorithms available for this …
An alignment confidence score capturing robustness to guide tree uncertainty
Multiple sequence alignment (MSA) is the basis for a wide range of comparative sequence
analyses from molecular phylogenetics to 3D structure prediction. Sophisticated algorithms …
analyses from molecular phylogenetics to 3D structure prediction. Sophisticated algorithms …