A scored human protein–protein interaction network to catalyze genomic interpretation

T Li, R Wernersson, RB Hansen, H Horn, J Mercer… - Nature …, 2017 - nature.com
Genome-scale human protein–protein interaction networks are critical to understanding cell
biology and interpreting genomic data, but challenging to produce experimentally. Through …

[HTML][HTML] A proteome-scale map of the human interactome network

T Rolland, M Taşan, B Charloteaux, SJ Pevzner… - Cell, 2014 - cell.com
Just as reference genome sequences revolutionized human genetics, reference maps of
interactome networks will be critical to fully understand genotype-phenotype relationships …

A human functional protein interaction network and its application to cancer data analysis

G Wu, X Feng, L Stein - Genome biology, 2010 - Springer
Background One challenge facing biologists is to tease out useful information from massive
data sets for further analysis. A pathway-based analysis may shed light by projecting …

Probabilistic model of the human protein-protein interaction network

DR Rhodes, SA Tomlins, S Varambally… - Nature …, 2005 - nature.com
A catalog of all human protein-protein interactions would provide scientists with a framework
to study protein deregulation in complex diseases such as cancer. Here we demonstrate that …

A first-draft human protein-interaction map

B Lehner, AG Fraser - Genome biology, 2004 - Springer
Background Protein-interaction maps are powerful tools for suggesting the cellular functions
of genes. Although large-scale protein-interaction maps have been generated for several …

Interactome INSIDER: a structural interactome browser for genomic studies

MJ Meyer, JF Beltrán, S Liang, R Fragoza, A Rumack… - Nature …, 2018 - nature.com
We present Interactome INSIDER, a tool to link genomic variant information with structural
protein–protein interactomes. Underlying this tool is the application of machine learning to …

Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets

TKB Gandhi, J Zhong, S Mathivanan, L Karthick… - Nature …, 2006 - nature.com
We present the first analysis of the human proteome with regard to interactions between
proteins. We also compare the human interactome with the available interaction datasets …

Revealing protein-protein interactions at the transcriptome scale by sequencing

KL Johnson, Z Qi, Z Yan, X Wen, TC Nguyen… - Molecular cell, 2021 - cell.com
We describe PROPER-seq (protein-protein interaction sequencing) to map protein-protein
interactions (PPIs) en masse. PROPER-seq first converts transcriptomes of input cells into …

An empirical framework for binary interactome mapping

K Venkatesan, JF Rual, A Vazquez, U Stelzl… - Nature …, 2009 - nature.com
Several attempts have been made to systematically map protein-protein interaction,
or'interactome', networks. However, it remains difficult to assess the quality and coverage of …

A human protein-protein interaction network: a resource for annotating the proteome

U Stelzl, U Worm, M Lalowski, C Haenig, FH Brembeck… - Cell, 2005 - cell.com
Protein-protein interaction maps provide a valuable framework for a better understanding of
the functional organization of the proteome. To detect interacting pairs of human proteins …