Frontiers and techniques in plant gene regulation

T Jores, M Hamm, JT Cuperus, C Queitsch - Current Opinion in Plant …, 2023 - Elsevier
Understanding plant gene regulation has been a priority for generations of plant scientists.
However, due to its complex nature, the regulatory code governing plant gene expression …

[HTML][HTML] Mapping regulatory determinants in plants

M Galli, F Feng, A Gallavotti - Frontiers in Genetics, 2020 - frontiersin.org
The domestication and improvement of many plant species have frequently involved
modulation of transcriptional outputs and continue to offer much promise for targeted trait …

Artificial transcription factor-mediated regulation of gene expression

N van Tol, BJ van der Zaal - Plant Science, 2014 - Elsevier
The transcriptional regulation of endogenous genes with artificial transcription factors (TFs)
can offer new tools for plant biotechnology. Three systems are available for mediating site …

Transcriptional and post-transcriptional controls for tuning gene expression in plants

V Zhong, BN Archibald, JAN Brophy - Current Opinion in Plant Biology, 2023 - Elsevier
Plant biotechnologists seek to modify plants through genetic reprogramming, but our ability
to precisely control gene expression in plants is still limited. Here, we review transcription …

Evolutionary analysis of regulatory sequences (EARS) in plants

E Picot, P Krusche, A Tiskin, I Carré, S Ott - The Plant Journal, 2010 - Wiley Online Library
Identification of regulatory sequences within non‐coding regions of DNA is an essential step
towards elucidation of gene networks. This approach constitutes a major challenge …

[HTML][HTML] ChIP-Hub provides an integrative platform for exploring plant regulome

LY Fu, T Zhu, X Zhou, R Yu, Z He, P Zhang… - Nature …, 2022 - nature.com
Plant genomes encode a complex and evolutionary diverse regulatory grammar that forms
the basis for most life on earth. A wealth of regulome and epigenome data have been …

Promoter analysis and transcription profiling: Integration of genetic data enhances understanding of gene expression

M Venter, FC Botha - Physiologia Plantarum, 2004 - Wiley Online Library
It is increasingly evident that transcription control might be conserved among organisms. For
this reason, genome sequencing and gene expression profiling methods, which have …

Plant transcription factors

T Meshi, M Iwabuchi - Plant and cell physiology, 1995 - academic.oup.com
Transcriptional regulation of gene expression relies on the recognition of promoter elements
by transcription factors. In the past several years, a considerable number of (putative) …

Synthetic promoters: genetic control through cis engineering

M Venter - Trends in plant science, 2007 - cell.com
Technological advances in plant genetics integrated with systems biology and
bioinformatics has yielded a myriad of novel biological data and insights into plant …

Identification and evolution of gene regulatory networks: insights from comparative studies in plants

DM Jones, K Vandepoele - Current opinion in plant biology, 2020 - Elsevier
Highlights•Target genes of orthologous transcription factors can vary greatly.•Duplicated
transcription factor genes frequently have divergent expression patterns.•Comparing gene …