FABIA: factor analysis for bicluster acquisition

S Hochreiter, U Bodenhofer, M Heusel, A Mayr… - …, 2010 - academic.oup.com
Motivation: Biclustering of transcriptomic data groups genes and samples simultaneously. It
is emerging as a standard tool for extracting knowledge from gene expression …

[HTML][HTML] Bayesian biclustering of gene expression data

J Gu, JS Liu - BMC genomics, 2008 - Springer
Background Biclustering of gene expression data searches for local patterns of gene
expression. A bicluster (or a two-way cluster) is defined as a set of genes whose expression …

A systematic comparison and evaluation of biclustering methods for gene expression data

A Prelić, S Bleuler, P Zimmermann, A Wille… - …, 2006 - academic.oup.com
Motivation: In recent years, there have been various efforts to overcome the limitations of
standard clustering approaches for the analysis of gene expression data by grouping genes …

A comparative analysis of biclustering algorithms for gene expression data

K Eren, M Deveci, O Küçüktunç… - Briefings in …, 2013 - academic.oup.com
The need to analyze high-dimension biological data is driving the development of new data
mining methods. Biclustering algorithms have been successfully applied to gene expression …

[HTML][HTML] A systematic comparative evaluation of biclustering techniques

VA Padilha, RJGB Campello - BMC bioinformatics, 2017 - Springer
Background Biclustering techniques are capable of simultaneously clustering rows and
columns of a data matrix. These techniques became very popular for the analysis of gene …

It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data

J Xie, A Ma, A Fennell, Q Ma, J Zhao - Briefings in bioinformatics, 2019 - academic.oup.com
Biclustering is a powerful data mining technique that allows clustering of rows and columns,
simultaneously, in a matrix-format data set. It was first applied to gene expression data in …

[HTML][HTML] BicPAMS: software for biological data analysis with pattern-based biclustering

R Henriques, FL Ferreira, SC Madeira - BMC bioinformatics, 2017 - Springer
Background Biclustering has been largely applied for the unsupervised analysis of
biological data, being recognised today as a key technique to discover putative modules in …

[HTML][HTML] Biclustering methods: biological relevance and application in gene expression analysis

A Oghabian, S Kilpinen, S Hautaniemi, E Czeizler - PloS one, 2014 - journals.plos.org
DNA microarray technologies are used extensively to profile the expression levels of
thousands of genes under various conditions, yielding extremely large data-matrices. Thus …

QUBIC2: a novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data

J Xie, A Ma, Y Zhang, B Liu, S Cao, C Wang, J Xu… - …, 2020 - academic.oup.com
Motivation The biclustering of large-scale gene expression data holds promising potential
for detecting condition-specific functional gene modules (ie biclusters). However, existing …

[HTML][HTML] A biclustering algorithm based on a bicluster enumeration tree: application to dna microarray data

W Ayadi, M Elloumi, JK Hao - BioData mining, 2009 - Springer
Background In a number of domains, like in DNA microarray data analysis, we need to
cluster simultaneously rows (genes) and columns (conditions) of a data matrix to identify …