Cell fate inclination within 2-cell and 4-cell mouse embryos revealed by single-cell RNA sequencing

FH Biase, X Cao, S Zhong - Genome research, 2014 - genome.cshlp.org
It remains an open question when and how the first cell fate decision is made in mammals.
Using deep single-cell RNA-seq of matched sister blastomeres, we report highly …

Dynamic transcriptional symmetry-breaking in pre-implantation mammalian embryo development revealed by single-cell RNA-seq

J Shi, Q Chen, X Li, X Zheng, Y Zhang, J Qiao… - …, 2015 - journals.biologists.com
During mammalian pre-implantation embryo development, when the first asymmetry
emerges and how it develops to direct distinct cell fates remain longstanding questions …

Limited predictive value of blastomere angle of division in trophectoderm and inner cell mass specification

T Watanabe, JS Biggins, NB Tannan… - …, 2014 - journals.biologists.com
The formation of trophectoderm (TE) and pluripotent inner cell mass (ICM) is one of the
earliest events during mammalian embryogenesis. It is believed that the orientation of …

The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution

JA Briggs, C Weinreb, DE Wagner, S Megason… - Science, 2018 - science.org
INTRODUCTION Metazoan development represents a big jump in complexity compared
with unicellular life in two aspects: cell-type differentiation and cell spatial organization. In …

Systematic reconstruction of cellular trajectories across mouse embryogenesis

C Qiu, J Cao, BK Martin, T Li, IC Welsh, S Srivatsan… - Nature …, 2022 - nature.com
Mammalian embryogenesis is characterized by rapid cellular proliferation and
diversification. Within a few weeks, a single-cell zygote gives rise to millions of cells …

Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells

Q Deng, D Ramsköld, B Reinius, R Sandberg - Science, 2014 - science.org
Expression from both alleles is generally observed in analyses of diploid cell populations,
but studies addressing allelic expression patterns genome-wide in single cells are lacking …

Clonal dynamics in early human embryogenesis inferred from somatic mutation

S Park, NM Mali, R Kim, JW Choi, J Lee, J Lim, JM Park… - Nature, 2021 - nature.com
Cellular dynamics and fate decision in early human embryogenesis remain largely unknown
owing to the challenges of performing studies in human embryos. Here, we explored whole …

Establishment of trophectoderm and inner cell mass lineages in the mouse embryo

Y Marikawa, VB Alarcón - Molecular Reproduction and …, 2009 - Wiley Online Library
The first cell lineage specification in mouse embryo development is the formation of
trophectoderm (TE) and inner cell mass (ICM) of the blastocyst. This article is to review and …

The cis-regulatory dynamics of embryonic development at single-cell resolution

DA Cusanovich, JP Reddington, DA Garfield, RM Daza… - Nature, 2018 - nature.com
Understanding how gene regulatory networks control the progressive restriction of cell fates
is a long-standing challenge. Recent advances in measuring gene expression in single cells …

Understanding development and stem cells using single cell-based analyses of gene expression

P Kumar, Y Tan, P Cahan - Development, 2017 - journals.biologists.com
In recent years, genome-wide profiling approaches have begun to uncover the molecular
programs that drive developmental processes. In particular, technical advances that enable …