Whole-genome sequencing reveals a complex African population demographic history and signatures of local adaptation

S Fan, JP Spence, Y Feng, MEB Hansen, J Terhorst… - Cell, 2023 - cell.com
We conduct high coverage (> 30×) whole-genome sequencing of 180 individuals from 12
indigenous African populations. We identify millions of unreported variants, many predicted …

[HTML][HTML] Evolutionary history and adaptation from high-coverage whole-genome sequences of diverse African hunter-gatherers

J Lachance, B Vernot, CC Elbers, B Ferwerda… - Cell, 2012 - cell.com
To reconstruct modern human evolutionary history and identify loci that have shaped hunter-
gatherer adaptation, we sequenced the whole genomes of five individuals in each of three …

Integrative functional genomic analyses identify genetic variants influencing skin pigmentation in Africans

Y Feng, N Xie, F Inoue, S Fan, J Saskin, C Zhang… - Nature Genetics, 2024 - nature.com
Skin color is highly variable in Africans, yet little is known about the underlying molecular
mechanism. Here we applied massively parallel reporter assays to screen 1,157 candidate …

Whole-genome sequence analyses of Western Central African Pygmy hunter-gatherers reveal a complex demographic history and identify candidate genes under …

PH Hsieh, KR Veeramah, J Lachance… - Genome …, 2016 - genome.cshlp.org
African Pygmies practicing a mobile hunter-gatherer lifestyle are phenotypically and
genetically diverged from other anatomically modern humans, and they likely experienced …

Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection

RD George, G McVicker, R Diederich, SB Ng… - Genome …, 2011 - genome.cshlp.org
Comparison of protein-coding DNA sequences from diverse primates can provide insight
into these species' evolutionary history and uncover the molecular basis for their phenotypic …

High-depth African genomes inform human migration and health

A Choudhury, S Aron, LR Botigué, D Sengupta… - Nature, 2020 - nature.com
The African continent is regarded as the cradle of modern humans and African genomes
contain more genetic variation than those from any other continent, yet only a fraction of the …

Patterns of ancestry, signatures of natural selection, and genetic association with stature in Western African pygmies

JP Jarvis, LB Scheinfeldt, S Soi, C Lambert… - PLoS …, 2012 - journals.plos.org
African Pygmy groups show a distinctive pattern of phenotypic variation, including short
stature, which is thought to reflect past adaptation to a tropical environment. Here, we …

Khoe-San Genomes Reveal Unique Variation and Confirm the Deepest Population Divergence in Homo sapiens

CM Schlebusch, P Sjödin, G Breton… - Molecular biology …, 2020 - academic.oup.com
Abstract The southern African indigenous Khoe-San populations harbor the most divergent
lineages of all living peoples. Exploring their genomes is key to understanding deep human …

Gene expression in African Americans, Puerto Ricans and Mexican Americans reveals ancestry-specific patterns of genetic architecture

L Kachuri, ACY Mak, D Hu, C Eng, S Huntsman… - Nature …, 2023 - nature.com
We explored ancestry-related differences in the genetic architecture of whole-blood gene
expression using whole-genome and RNA sequencing data from 2,733 African Americans …

Whole-genome sequencing for an enhanced understanding of genetic variation among South Africans

A Choudhury, M Ramsay, S Hazelhurst, S Aron… - Nature …, 2017 - nature.com
Abstract The Southern African Human Genome Programme is a national initiative that
aspires to unlock the unique genetic character of southern African populations for a better …