BP Tsai, X Wang, L Huang, ML Waterman - Molecular & Cellular Proteomics, 2011 - ASBMB
Identification of proteins in RNA-protein complexes is an important step toward understanding regulation of RNA-based processes. Because of the lack of appropriate …
TS Stenum, AD Kumar, FA Sandbaumhüter… - Nucleic Acids …, 2023 - academic.oup.com
RNA-binding proteins (RPBs) are deeply involved in fundamental cellular processes in bacteria and are vital for their survival. Despite this, few studies have so far been dedicated …
Protein–RNA interactions regulate RNA fate and function, and defects can lead to various disorders. Such interactions have mainly been studied by nucleoside-based UV crosslinking …
Z Wang, J Tollervey, M Briese, D Turner, J Ule - Methods, 2009 - Elsevier
UV cross-linking and immunoprecipitation assay (CLIP) can identify direct interaction sites between RNA-binding proteins and RNAs in vivo, and has been used to study several …
V Shchepachev, S Bresson, C Spanos… - Molecular systems …, 2019 - embopress.org
The RNA binding proteome (RBP ome) was previously investigated using UV crosslinking and purification of poly (A)‐associated proteins. However, most cellular transcripts are not …
RML Queiroz, T Smith, E Villanueva… - Nature …, 2019 - nature.com
Existing high-throughput methods to identify RNA-binding proteins (RBPs) are based on capture of polyadenylated RNAs and cannot recover proteins that interact with …
The human transcriptome contains thousands of long non-coding RNAs (lncRNAs). Characterizing their function is a current challenge. An emerging concept is that lncRNAs …
CA McHugh, M Guttman - RNA detection: Methods and protocols, 2018 - Springer
RNA molecules interact with proteins to perform a variety of functions in living cells. The binding partners of many RNAs, in particular the newly discovered class of long noncoding …
A Castello, R Horos, C Strein, B Fischer… - Nature protocols, 2013 - nature.com
Owing to their preeminent biological functions, the repertoire of expressed RNA-binding proteins (RBPs) and their activity states are highly informative about cellular systems. We …