Networks are typically visualized with force-based or spectral layouts. These algorithms lack
reproducibility and perceptual uniformity because they do not use a node coordinate system …

Gene expression, signal transduction, protein/chemical interactions, biomedical literature
cooccurrences, and other concepts are often captured in biological network representations …

NAViGaTOR is a powerful graphing application for the 2D and 3D visualization of biological
networks. NAViGaTOR includes a rich suite of visual mark-up tools for manual and …

The graph drawing and information visualization communities have developed many
sophisticated techniques for visualizing network data, often involving complicated algorithms …

With the spread of the network paradigm to many disciplines from sociology and ethnology
to computer science, biology, physics, and economics, many computer programs have …

Gephi is a network visualization software used in various disciplines (social network
analysis, biology, genomics…). One of its key features is the ability to display the …

The analysis and interpretation of relationships between biological molecules, networks and
concepts is becoming a major bottleneck in systems biology. Very often the pure amount of …

Networks are abstract and ubiquitous data structures, defined as a set of data points and
relationships between them. Network visualization provides meaningful representations of …

Networks are one of the most common ways to represent biological systems as complex sets
of binary interactions or relations between different bioentities. In this article, we discuss the …

Motivation: Visualization is indispensable in the research of complex biochemical networks.
Available graph layout algorithms are not adequate for satisfactorily drawing such networks …