Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex

KR Maynard, L Collado-Torres, LM Weber… - Nature …, 2021 - nature.com
We used the 10x Genomics Visium platform to define the spatial topography of gene
expression in the six-layered human dorsolateral prefrontal cortex. We identified extensive …

[PDF][PDF] Whole-genome and RNA sequencing reveal variation and transcriptomic coordination in the developing human prefrontal cortex

DM Werling, S Pochareddy, J Choi, JY An, B Sheppard… - Cell reports, 2020 - cell.com
Gene expression levels vary across developmental stage, cell type, and region in the brain.
Genomic variants also contribute to the variation in expression, and some neuropsychiatric …

Global gene expression profiling of healthy human brain and its application in studying neurological disorders

SK Negi, C Guda - Scientific reports, 2017 - nature.com
Brain function is governed by precise regulation of gene expression across its anatomically
distinct structures; however, the expression patterns of genes across hundreds of brain …

An anatomically comprehensive atlas of the adult human brain transcriptome

MJ Hawrylycz, ES Lein, AL Guillozet-Bongaarts… - Nature, 2012 - nature.com
Neuroanatomically precise, genome-wide maps of transcript distributions are critical
resources to complement genomic sequence data and to correlate functional and genetic …

DeepST: identifying spatial domains in spatial transcriptomics by deep learning

C Xu, X Jin, S Wei, P Wang, M Luo, Z Xu… - Nucleic Acids …, 2022 - academic.oup.com
Recent advances in spatial transcriptomics (ST) have brought unprecedented opportunities
to understand tissue organization and function in spatial context. However, it is still …

Developmental regulation of human cortex transcription and its clinical relevance at single base resolution

AE Jaffe, J Shin, L Collado-Torres, JT Leek, R Tao… - Nature …, 2015 - nature.com
Transcriptome analysis of human brain provides fundamental insight into development and
disease, but it largely relies on existing annotation. We sequenced transcriptomes of 72 …

[HTML][HTML] Spatial atlas of the mouse central nervous system at molecular resolution

H Shi, Y He, Y Zhou, J Huang, K Maher, B Wang… - Nature, 2023 - nature.com
Spatially charting molecular cell types at single-cell resolution across the 3D volume is
critical for illustrating the molecular basis of brain anatomy and functions. Single-cell RNA …

Gene expression links functional networks across cortex and striatum

KM Anderson, FM Krienen, EY Choi, JM Reinen… - Nature …, 2018 - nature.com
The human brain is comprised of a complex web of functional networks that link
anatomically distinct regions. However, the biological mechanisms supporting network …

Cell type-specific genes show striking and distinct patterns of spatial expression in the mouse brain

Y Ko, SA Ament, JA Eddy, J Caballero… - Proceedings of the …, 2013 - National Acad Sciences
To characterize gene expression patterns in the regional subdivisions of the mammalian
brain, we integrated spatial gene expression patterns from the Allen Brain Atlas for the adult …

The molecular cytoarchitecture of the adult mouse brain

J Langlieb, NS Sachdev, KS Balderrama, NM Nadaf… - Nature, 2023 - nature.com
The function of the mammalian brain relies upon the specification and spatial positioning of
diversely specialized cell types. Yet, the molecular identities of the cell types and their …