JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

A Khan, O Fornes, A Stigliani, M Gheorghe… - Nucleic acids …, 2018 - academic.oup.com
Abstract JASPAR (http://jaspar. genereg. net) is an open-access database of curated, non-
redundant transcription factor (TF)-binding profiles stored as position frequency matrices …

JASPAR 2020: update of the open-access database of transcription factor binding profiles

O Fornes, JA Castro-Mondragon, A Khan… - Nucleic acids …, 2020 - academic.oup.com
Abstract JASPAR (http://jaspar. genereg. net) is an open-access database of curated, non-
redundant transcription factor (TF)-binding profiles stored as position frequency matrices …

JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles

JA Castro-Mondragon, R Riudavets-Puig… - Nucleic acids …, 2022 - academic.oup.com
Abstract JASPAR (http://jaspar. genereg. net/) is an open-access database containing
manually curated, non-redundant transcription factor (TF) binding profiles for TFs across six …

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

A Mathelier, X Zhao, AW Zhang, F Parcy… - Nucleic acids …, 2014 - academic.oup.com
Abstract JASPAR (http://jaspar. genereg. net) is the largest open-access database of matrix-
based nucleotide profiles describing the binding preference of transcription factors from …

JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles

A Mathelier, O Fornes, DJ Arenillas, C Chen… - Nucleic acids …, 2016 - academic.oup.com
Abstract JASPAR (http://jaspar. genereg. net) is an open-access database storing curated,
non-redundant transcription factor (TF) binding profiles representing transcription factor …

JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles

I Rauluseviciute, R Riudavets-Puig… - Nucleic Acids …, 2024 - academic.oup.com
Abstract JASPAR (https://jaspar. elixir. no/) is a widely-used open-access database
presenting manually curated high-quality and non-redundant DNA-binding profiles for …

AnimalTFDB 4.0: a comprehensive animal transcription factor database updated with variation and expression annotations

WK Shen, SY Chen, ZQ Gan, YZ Zhang… - Nucleic acids …, 2023 - academic.oup.com
Transcription factors (TFs) are proteins that interact with specific DNA sequences to regulate
gene expression and play crucial roles in all kinds of biological processes. To keep up with …

ConTra v3: a tool to identify transcription factor binding sites across species, update 2017

Ł Kreft, A Soete, P Hulpiau, A Botzki… - Nucleic acids …, 2017 - academic.oup.com
Transcription factors are important gene regulators with distinctive roles in development, cell
signaling and cell cycling, and they have been associated with many diseases. The ConTra …

[HTML][HTML] UniBind: maps of high-confidence direct TF-DNA interactions across nine species

RR Puig, P Boddie, A Khan, JA Castro-Mondragon… - BMC genomics, 2021 - Springer
Abstract Background Transcription factors (TFs) bind specifically to TF binding sites (TFBSs)
at cis-regulatory regions to control transcription. It is critical to locate these TF-DNA …

A new generation of JASPAR, the open-access repository for transcription factor binding site profiles

D Vlieghe, A Sandelin, PJ De Bleser… - Nucleic acids …, 2006 - academic.oup.com
JASPAR is the most complete open-access collection of transcription factor binding site
(TFBS) matrices. In this new release, JASPAR grows into a meta-database of collections of …