ODAE: Ontology-based systematic representation and analysis of drug adverse events and its usage in study of adverse events given different patient age and …

H Yu, S Nysak, N Garg, E Ong, X Ye, X Zhang, Y He - BMC bioinformatics, 2019 - Springer
Abstract Background Drug adverse events (AEs), or called adverse drug events (ADEs), are
ranked one of the leading causes of mortality. The Ontology of Adverse Events (OAE) has …

Ontology-based collection, representation and analysis of drug-associated neuropathy adverse events

A Guo, R Racz, J Hur, Y Lin, Z Xiang, L Zhao… - Journal of biomedical …, 2016 - Springer
Background Neuropathy often occurs following drug treatment such as chemotherapy.
Severe instances of neuropathy can result in cessation of life-saving chemotherapy …

Building a knowledge base of severe adverse drug events based on AERS reporting data using semantic web technologies

G Jiang, L Wang, H Liu, HR Solbrig, CG Chute - MEDINFO 2013, 2013 - ebooks.iospress.nl
A semantically coded knowledge base of adverse drug events (ADEs) with severity
information is critical for clinical decision support systems and translational research …

[HTML][HTML] Ontological organization and bioinformatic analysis of adverse drug reactions from package inserts: Development and usability study

X Li, X Lin, H Ren, J Guo - Journal of Medical Internet Research, 2020 - jmir.org
Background Licensed drugs may cause unexpected adverse reactions in patients, resulting
in morbidity, risk of mortality, therapy disruptions, and prolonged hospital stays. Officially …

Needs for an expanded ontology‐based classification of adverse drug reactions and related mechanisms

PE Zhichkin, BD Athey, MI Avigan… - Clinical …, 2012 - Wiley Online Library
The growing significance of bioinformatics and systems biology in drug safety research
requires a system of adverse‐event classification that goes beyond a simple vocabulary …

Ontology-based vaccine and drug adverse event representation and theory-guided systematic causal network analysis toward integrative pharmacovigilance research

Y He - Current pharmacology reports, 2016 - Springer
Compared with controlled terminologies (eg, MedDRA, CTCAE, and WHO-ART), the
community-based Ontology of Adverse Events (OAEs) has many advantages in AE …

Ontology-based literature mining and class effect analysis of adverse drug reactions associated with neuropathy-inducing drugs

J Hur, A Özgür, Y He - Journal of biomedical semantics, 2018 - Springer
Abstract Background Adverse drug reactions (ADRs), also called as drug adverse events
(AEs), are reported in the FDA drug labels; however, it is a big challenge to properly retrieve …

Exploring adverse drug events at the class level

R Winnenburg, A Sorbello, O Bodenreider - Journal of Biomedical …, 2015 - Springer
Background While the association between a drug and an adverse event (ADE) is generally
detected at the level of individual drugs, ADEs are often discussed at the class level, ie, at …

[HTML][HTML] Towards precision informatics of pharmacovigilance: OAE-CTCAE mapping and OAE-based representation and analysis of adverse events in patients treated …

MU Wong, R Racz, E Ong, Y He - AMIA Annual Symposium …, 2017 - ncbi.nlm.nih.gov
A critical issue in the usage of cancer drugs is its association with various adverse events
(AEs) in some, but not all, patients. The National Cancer Institute (NCI) Common …

Linking MedDRA®-Coded Clinical Phenotypes to Biological Mechanisms by the Ontology of Adverse Events: A Pilot Study on Tyrosine Kinase Inhibitors

S Sarntivijai, S Zhang, DG Jagannathan, S Zaman… - Drug safety, 2016 - Springer
Introduction A translational bioinformatics challenge exists in connecting population and
individual clinical phenotypes in various formats to biological mechanisms. The Medical …