Unravelling intratumoral heterogeneity through high-sensitivity single-cell mutational analysis and parallel RNA sequencing

A Rodriguez-Meira, G Buck, SA Clark, BJ Povinelli… - Molecular cell, 2019 - cell.com
Single-cell RNA sequencing (scRNA-seq) has emerged as a powerful tool for resolving
transcriptional heterogeneity. However, its application to studying cancerous tissues is …

Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data

J Fan, HO Lee, S Lee, D Ryu, S Lee, C Xue… - Genome …, 2018 - genome.cshlp.org
Characterization of intratumoral heterogeneity is critical to cancer therapy, as the presence
of phenotypically diverse cell populations commonly fuels relapse and resistance to …

[HTML][HTML] Advances in single-cell RNA sequencing and its applications in cancer research

S Zhu, T Qing, Y Zheng, L Jin, L Shi - Oncotarget, 2017 - ncbi.nlm.nih.gov
Unlike population-level approaches, single-cell RNA sequencing enables transcriptomic
analysis of an individual cell. Through the combination of high-throughput sequencing and …

A highly scalable method for joint whole-genome sequencing and gene-expression profiling of single cells

V Zachariadis, H Cheng, N Andrews, M Enge - Molecular Cell, 2020 - cell.com
To address how genetic variation alters gene expression in complex cell mixtures, we
developed direct nuclear tagmentation and RNA sequencing (DNTR-seq), which enables …

Single-cell transcriptomic analysis of tumor heterogeneity

HM Levitin, J Yuan, PA Sims - Trends in cancer, 2018 - cell.com
Intratumoral heterogeneity is among the greatest challenges in precision cancer therapy.
However, developments in high-throughput single-cell RNA sequencing (scRNA-seq) may …

Advances in single-cell RNA sequencing and its applications in cancer research

D Huang, N Ma, X Li, Y Gou, Y Duan, B Liu… - Journal of hematology & …, 2023 - Springer
Cancers are a group of heterogeneous diseases characterized by the acquisition of
functional capabilities during the transition from a normal to a neoplastic state. Powerful …

Identifying phenotype-associated subpopulations by integrating bulk and single-cell sequencing data

D Sun, X Guan, AE Moran, LY Wu, DZ Qian… - Nature …, 2022 - nature.com
Single-cell RNA sequencing (scRNA-seq) distinguishes cell types, states and lineages
within the context of heterogeneous tissues. However, current single-cell data cannot …

XYZeq: Spatially resolved single-cell RNA sequencing reveals expression heterogeneity in the tumor microenvironment

Y Lee, D Bogdanoff, Y Wang, GC Hartoularos… - Science …, 2021 - science.org
Single-cell RNA sequencing (scRNA-seq) of tissues has revealed remarkable heterogeneity
of cell types and states but does not provide information on the spatial organization of cells …

Single-cell sequencing and tumorigenesis: improved understanding of tumor evolution and metastasis

DL Ellsworth, HL Blackburn, CD Shriver… - Clinical and translational …, 2017 - Springer
Extensive genomic and transcriptomic heterogeneity in human cancer often negatively
impacts treatment efficacy and survival, thus posing a significant ongoing challenge for …

Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors

H Li, ET Courtois, D Sengupta, Y Tan, KH Chen… - Nature …, 2017 - nature.com
Intratumoral heterogeneity is a major obstacle to cancer treatment and a significant
confounding factor in bulk-tumor profiling. We performed an unbiased analysis of …