Characterizing crosstalk in epigenetic signaling to understand disease physiology

JK Lempiäinen, BA Garcia - Biochemical Journal, 2023 - portlandpress.com
Epigenetics, the inheritance of genomic information independent of DNA sequence, controls
the interpretation of extracellular and intracellular signals in cell homeostasis, proliferation …

The contribution of mass spectrometry-based proteomics to understanding epigenetics

R Noberini, G Sigismondo, T Bonaldi - Epigenomics, 2016 - Future Medicine
Chromatin is a macromolecular complex composed of DNA and histones that regulate gene
expression and nuclear architecture. The concerted action of DNA methylation, histone post …

Investigating pathological epigenetic aberrations by epi-proteomics

G Robusti, A Vai, T Bonaldi, R Noberini - Clinical Epigenetics, 2022 - Springer
Epigenetics includes a complex set of processes that alter gene activity without modifying
the DNA sequence, which ultimately determines how the genetic information common to all …

Building the Connectivity Map of epigenetics: chromatin profiling by quantitative targeted mass spectrometry

AL Creech, JE Taylor, VK Maier, X Wu, CM Feeney… - Methods, 2015 - Elsevier
Epigenetic control of genome function is an important regulatory mechanism in diverse
processes such as lineage commitment and environmental sensing, and in disease …

Proteomics in epigenetics: new perspectives for cancer research

T Bartke, J Borgel, PA DiMaggio - Briefings in functional …, 2013 - academic.oup.com
The involvement of epigenetic processes in the origin and progression of cancer is now
widely appreciated. Consequently, targeting the enzymatic machinery that controls the …

Combining genomic and proteomic approaches for epigenetics research

Y Han, BA Garcia - Epigenomics, 2013 - Future Medicine
Epigenetics is the study of changes in gene expression or cellular phenotype that do not
change the DNA sequence. In this review, current methods, both genomic and proteomic …

Chromatin proteomics to study epigenetics—challenges and opportunities

G van Mierlo, M Vermeulen - Molecular & Cellular Proteomics, 2021 - ASBMB
Regulation of gene expression is essential for the functioning of all eukaryotic organisms.
Understanding gene expression regulation requires determining which proteins interact with …

Proteomics in chromatin biology and epigenetics: Elucidation of post-translational modifications of histone proteins by mass spectrometry

S Sidoli, L Cheng, ON Jensen - Journal of proteomics, 2012 - Elsevier
Histone proteins contribute to the maintenance and regulation of the dynamic chromatin
structure, to gene activation, DNA repair and many other processes in the cell nucleus. Site …

[HTML][HTML] Biochemical systems approaches for the analysis of histone modification readout

M Soldi, M Bremang, T Bonaldi - Biochimica et Biophysica Acta (BBA) …, 2014 - Elsevier
Chromatin is the macromolecular nucleoprotein complex that governs the organization of
genetic material in the nucleus of eukaryotic cells. In chromatin, DNA is packed with histone …

Towards cracking the epigenetic code using a combination of high‐throughput epigenomics and quantitative mass spectrometry‐based proteomics

HG Stunnenberg, M Vermeulen - Bioessays, 2011 - Wiley Online Library
High‐throughput genomic sequencing and quantitative mass spectrometry (MS)‐based
proteomics technology have recently emerged as powerful tools, increasing our …