[HTML][HTML] Long-read single-cell RNA sequencing enables the study of cancer subclone-specific genotype and phenotype in chronic lymphocytic leukemia

GS Black, X Huang, Y Qiao, P Moos, D Sampath… - bioRxiv, 2024 - ncbi.nlm.nih.gov
Bruton's tyrosine kinase (BTK) inhibitors are effective for the treatment of chronic lymphocytic
leukemia (CLL) due to BTK's role in B cell survival and proliferation. Treatment resistance is …

Integrated analysis of targeted single-cell genetic and transcriptional heterogeneity suggests novel drivers of chronic lymphocytic leukemia

J Fan, L Wang, JM Francis, G Georghiou, S Hergert… - Clinical Cancer …, 2017 - AACR
Intratumoral genetic heterogeneity has been characterized across cancers, including
chronic lymphocytic leukemia (CLL), and presents challenges to therapy as presence of …

Comprehensive analysis of disease-related genes in chronic lymphocytic leukemia by multiplex PCR-based next generation sequencing

C Vollbrecht, FD Mairinger, U Koitzsch, M Peifer… - PloS one, 2015 - journals.plos.org
Background High resolution molecular studies have demonstrated that the clonal acquisition
of gene mutations is an important mechanism that may promote rapid disease progression …

Single-cell Rapid Capture Hybridization sequencing (scRaCH-seq) to reliably detect isoform usage and coding mutations in targeted genes at a single-cell level

H Peng, JS Jabbari, L Tian, CC Chua, NS Anstee… - bioRxiv, 2024 - biorxiv.org
Single-cell long-read sequencing has transformed our understanding of isoform usage and
the mutation heterogeneity between cells. Despite unbiased in-depth analysis, the low …

The Gene Expression Landscape of BTK Inhibitor Treatment in Chronic Lymphocytic Leukemia Exposed By Shallow Depth RNA Sequencing

THL Do, C Lohoff, F Jung, V Benes, W Huber, J Lu… - Blood, 2023 - Elsevier
Efforts to understand chronic lymphocytic leukemia (CLL) subgroups have focused on multi-
omics profiling of patient cohorts (in steady-state) and linking biomarkers to responses …

Single-Cell Long-Read Sequencing Enables the Dissection of BTK Subclonal Dynamics in CLL Treatment

G Black, X Huang, Y Qiao, P Moos, DM Stephens… - Blood, 2023 - Elsevier
Introduction: BTK inhibition is an effective frontline therapy for patients with CLL. However,
patients who develop BTK C481S mutations relapse quickly. We recently published a …

Chronic lymphocytic leukemia: molecular heterogeneity revealed by high-throughput genomics

DA Landau, CJ Wu - Genome medicine, 2013 - Springer
Chronic lymphocytic leukemia (CLL) has been consistently at the forefront of genetic
research owing to its prevalence and the accessibility of sample material. Recently, genome …

Deep sequencing identifies genetic heterogeneity and recurrent convergent evolution in chronic lymphocytic leukemia

J Ojha, J Ayres, C Secreto, R Tschumper… - Blood, The Journal …, 2015 - ashpublications.org
Recent high-throughput sequencing and microarray studies have characterized the genetic
landscape and clonal complexity of chronic lymphocytic leukemia (CLL). Here, we …

Evolution of multiple cell clones over a 29-year period of a CLL patient

Z Zhao, L Goldin, S Liu, L Wu, W Zhou, H Lou… - Nature …, 2016 - nature.com
Chronic lymphocytic leukaemia (CLL) is a frequent B-cell malignancy, characterized by
recurrent somatic chromosome alterations and a low level of point mutations. Here we …

[HTML][HTML] Extensive high-depth sequencing of longitudinal CLL samples identifies frequent mutations in MAP kinase signaling and novel mutations activating notch and …

JR Gardner, MK Nahas, J He, M Patel, KM Knapp… - Blood, 2013 - Elsevier
Recent whole-genome sequencing, whole-exome sequencing, and copy number analysis
studies in small sets of patients with chronic lymphocytic leukemia (CLL) at presentation …