[HTML][HTML] A versatile, fast and unbiased method for estimation of gene-by-environment interaction effects on biobank-scale datasets

M Di Scipio, M Khan, S Mao, M Chong, C Judge… - Nature …, 2023 - nature.com
Identification of gene-by-environment interactions (GxE) is crucial to understand the
interplay of environmental effects on complex traits. However, current methods evaluating …

[HTML][HTML] Quantification of the overall contribution of gene-environment interaction for obesity-related traits

J Sulc, N Mounier, F Günther, T Winkler… - Nature …, 2020 - nature.com
The growing sample size of genome-wide association studies has facilitated the discovery of
gene-environment interactions (GxE). Here we propose a maximum likelihood method to …

[PDF][PDF] Inferring gene-by-environment interactions with a Bayesian whole-genome regression model

M Kerin, J Marchini - The American Journal of Human Genetics, 2020 - cell.com
The contribution of gene-by-environment (GxE) interactions for many human traits and
diseases is poorly characterized. We propose a Bayesian whole-genome regression model …

A linear mixed-model approach to study multivariate gene–environment interactions

R Moore, FP Casale, M Jan Bonder, D Horta… - Nature …, 2019 - nature.com
Different exposures, including diet, physical activity, or external conditions can contribute to
genotype–environment interactions (G× E). Although high-dimensional environmental data …

Allele-specific expression reveals interactions between genetic variation and environment

DA Knowles, JR Davis, H Edgington, A Raj, MJ Favé… - Nature …, 2017 - nature.com
Identifying interactions between genetics and the environment (GxE) remains challenging.
We have developed EAGLE, a hierarchical Bayesian model for identifying GxE interactions …

[HTML][HTML] GxEsum: a novel approach to estimate the phenotypic variance explained by genome-wide GxE interaction based on GWAS summary statistics for biobank …

J Shin, SH Lee - Genome biology, 2021 - Springer
Genetic variation in response to the environment, that is, genotype-by-environment
interaction (GxE), is fundamental in the biology of complex traits and diseases. However …

GEM: scalable and flexible gene–environment interaction analysis in millions of samples

KE Westerman, DT Pham, L Hong, Y Chen… - …, 2021 - academic.oup.com
Motivation Gene–environment interaction (GEI) studies are a general framework that can be
used to identify genetic variants that modify the effects of environmental, physiological …

VarExp: estimating variance explained by genome-wide GxE summary statistics

V Laville, AR Bentley, F Privé, X Zhu… - …, 2018 - academic.oup.com
Many genome-wide association studies and genome-wide screening for gene–environment
(GxE) interactions have been performed to elucidate the underlying mechanisms of human …

Detecting gene–environment interactions for a quantitative trait in a genome‐wide association study

P Zhang, JP Lewinger, D Conti, JL Morrison… - Genetic …, 2016 - Wiley Online Library
ABSTRACT A genome‐wide association study (GWAS) typically is focused on detecting
marginal genetic effects. However, many complex traits are likely to be the result of the …

Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank

H Wang, F Zhang, J Zeng, Y Wu, KE Kemper, A Xue… - Science …, 2019 - science.org
Genotype-by-environment interaction (GEI) is a fundamental component in understanding
complex trait variation. However, it remains challenging to identify genetic variants with GEI …