Deciphering the molecular basis of tissue-specific gene expression in plants: Can synthetic biology help?

AE Yaschenko, M Fenech, S Mazzoni-Putman… - Current opinion in plant …, 2022 - Elsevier
Gene expression differences between distinct cell types are orchestrated by specific sets of
transcription factors and epigenetic regulators acting upon the genome. In plants, the …

Plant synthetic biology for molecular engineering of signalling and development

JL Nemhauser, KU Torii - Nature plants, 2016 - nature.com
Molecular genetic studies of model plants in the past few decades have identified many key
genes and pathways controlling development, metabolism and environmental responses …

Synthetic developmental biology: molecular tools to re-design plant shoots and roots

EG Kocaoglan, D Radhakrishnan… - Journal of …, 2023 - academic.oup.com
Plant morphology and anatomy strongly influence agricultural yield. Crop domestication has
strived for desirable growth and developmental traits, such as larger and more fruits and …

A comprehensive toolkit for inducible, cell type-specific gene expression in Arabidopsis

AK Schürholz, V López-Salmerón, Z Li, J Forner… - Plant …, 2018 - academic.oup.com
Understanding the context-specific role of gene function is a key objective of modern
biology. To this end, we generated a resource for inducible cell type-specific transactivation …

[HTML][HTML] Quantitative and predictive genetic parts for plant synthetic biology

DM McCarthy, JI Medford - Frontiers in Plant Science, 2020 - frontiersin.org
Plant synthetic biology aims to harness the natural abilities of plants and to turn them to new
purposes. A primary goal of plant synthetic biology is to produce predictable and …

A versatile multisite gateway‐compatible promoter and transgenic line collection for cell type‐specific functional genomics in Arabidopsis

MM Marquès‐Bueno, AK Morao, A Cayrel… - The Plant …, 2016 - Wiley Online Library
Multicellular organisms are composed of many cell types that acquire their specific fate
through a precisely controlled pattern of gene expression in time and space dictated in part …

Artificial transcription factor-mediated regulation of gene expression

N van Tol, BJ van der Zaal - Plant Science, 2014 - Elsevier
The transcriptional regulation of endogenous genes with artificial transcription factors (TFs)
can offer new tools for plant biotechnology. Three systems are available for mediating site …

Synthetic promoters: genetic control through cis engineering

M Venter - Trends in plant science, 2007 - cell.com
Technological advances in plant genetics integrated with systems biology and
bioinformatics has yielded a myriad of novel biological data and insights into plant …

Building the plant SynBio toolbox through combinatorial analysis of DNA regulatory elements

AC Pfotenhauer, A Occhialini, MA Nguyen… - ACS Synthetic …, 2022 - ACS Publications
While the installation of complex genetic circuits in microorganisms is relatively routine, the
synthetic biology toolbox is severely limited in plants. Of particular concern is the absence of …

Screening of tissue-specific genes and promoters in tomato by comparing genome wide expression profiles of Arabidopsis orthologues

CJ Lim, HY Lee, WB Kim, BS Lee, J Kim, R Ahmad… - Molecules and …, 2012 - Springer
Constitutive overexpression of transgenes occasionally interferes with normal growth and
developmental processes in plants. Thus, the development of tissue-specific promoters that …