A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues
Background Although considerable progress has been made towards annotating the
noncoding portion of the human and mouse genomes, regulatory elements in other species …
noncoding portion of the human and mouse genomes, regulatory elements in other species …
Chromatin accessibility and regulatory vocabulary across indicine cattle tissues
Background Spatiotemporal changes in the chromatin accessibility landscape are essential
to cell differentiation, development, health, and disease. The quest of identifying regulatory …
to cell differentiation, development, health, and disease. The quest of identifying regulatory …
Profiling of chromatin accessibility in pigs across multiple tissues and developmental stages
J Bai, Y Lin, J Zhang, Z Chen, Y Wang, M Li… - International Journal of …, 2023 - mdpi.com
The study of chromatin accessibility across tissues and developmental stages is essential for
elucidating the transcriptional regulation of various phenotypes and biological processes …
elucidating the transcriptional regulation of various phenotypes and biological processes …
Multi-species annotation of transcriptome and chromatin structure in domesticated animals
Background Comparative genomics studies are central in identifying the coding and non-
coding elements associated with complex traits, and the functional annotation of genomes is …
coding elements associated with complex traits, and the functional annotation of genomes is …
Functional annotation of the cattle genome through systematic discovery and characterization of chromatin states and butyrate-induced variations
Background The functional annotation of genomes, including chromatin accessibility and
modifications, is important for understanding and effectively utilizing the increased amount of …
modifications, is important for understanding and effectively utilizing the increased amount of …
[HTML][HTML] Chicken chromatin accessibility atlas accelerates epigenetic annotation of birds and gene fine-mapping associated with growth traits
XN Zhu, YZ Wang, C Li, HY Wu, R Zhang… - Zoological …, 2023 - ncbi.nlm.nih.gov
The development of epigenetic maps, such as the ENCODE project in humans, provides
resources for gene regulation studies and a reference for research of disease-related …
resources for gene regulation studies and a reference for research of disease-related …
Transcription initiation mapping in 31 bovine tissues reveals complex promoter activity, pervasive transcription, and tissue-specific promoter usage
DE Goszczynski, MM Halstead, AD Islas-Trejo… - Genome …, 2021 - genome.cshlp.org
Characterizing transcription start sites is essential for understanding the regulatory
mechanisms that control gene expression. Recently, a new bovine genome assembly (ARS …
mechanisms that control gene expression. Recently, a new bovine genome assembly (ARS …
Comprehensive analyses of 723 transcriptomes enhance genetic and biological interpretations for complex traits in cattle
By uniformly analyzing 723 RNA-seq data from 91 tissues and cell types, we built a
comprehensive gene atlas and studied tissue specificity of genes in cattle. We demonstrated …
comprehensive gene atlas and studied tissue specificity of genes in cattle. We demonstrated …
Functional annotations of three domestic animal genomes provide vital resources for comparative and agricultural research
Gene regulatory elements are central drivers of phenotypic variation and thus of critical
importance towards understanding the genetics of complex traits. The Functional Annotation …
importance towards understanding the genetics of complex traits. The Functional Annotation …
An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation
GP Harhay, TPL Smith, LJ Alexander… - Genome Biology, 2010 - Springer
Background A comprehensive transcriptome survey, or gene atlas, provides information
essential for a complete understanding of the genomic biology of an organism. We present …
essential for a complete understanding of the genomic biology of an organism. We present …