Identifying homology relationships between sequences is fundamental to biological
research. Here we provide a novel orthogroup inference algorithm called OrthoFinder that …

Here, we present a major advance of the OrthoFinder method. This extends OrthoFinder's
high accuracy orthogroup inference to provide phylogenetic inference of orthologs, rooted …

Background OMA is a project that aims to identify orthologs within publicly available,
complete genomes. With 657 genomes analyzed to date, OMA is one of the largest projects …

Background Orthologs (genes that have diverged after a speciation event) tend to have
similar function, and so their prediction has become an important component of comparative …

Ortholog inference has fundamental importance across the biological sciences,
underpinning phylogenetics, comparative genomics and prediction of gene function. We …

Annotating coding genes and inferring orthologs are two classical challenges in genomics
and evolutionary biology that have traditionally been approached separately, limiting …

Achieving high accuracy in orthology inference is essential for many comparative,
evolutionary and functional genomic analyses, yet the true evolutionary history of genes is …

Motivation Accurate orthology inference is a fundamental step in many phylogenetics and
comparative analysis. Many methods have been proposed, including OMA (Orthologous …

Motivation: Inference of the evolutionary relation between proteins, in particular the
identification of orthologs, is a central problem in comparative genomics. Several large-scale …

Background Accurate identification of orthologs is crucial for evolutionary studies and for
functional annotation. Several algorithms have been developed for ortholog delineation, but …