A privacy-preserving solution for compressed storage and selective retrieval of genomic data

Z Huang, E Ayday, H Lin, RS Aiyar… - Genome …, 2016 - genome.cshlp.org
In clinical genomics, the continuous evolution of bioinformatic algorithms and sequencing
platforms makes it beneficial to store patients' complete aligned genomic data in addition to …

Privacy-preserving processing of raw genomic data

E Ayday, JL Raisaro, U Hengartner… - … Workshop on Data …, 2013 - Springer
Geneticists prefer to store patients' aligned, raw genomic data, in addition to their variant
calls (compact and summarized form of the raw data), mainly because of the immaturity of …

Cryfa: a secure encryption tool for genomic data

M Hosseini, D Pratas, AJ Pinho - Bioinformatics, 2019 - academic.oup.com
The ever-increasing growth of high-throughput sequencing technologies has led to a great
acceleration of medical and biological research and discovery. As these platforms advance …

Methods of privacy-preserving genomic sequencing data alignments

D Lu, Y Zhang, L Zhang, H Wang… - Briefings in …, 2021 - academic.oup.com
Genomic data alignment, a fundamental operation in sequencing, can be utilized to map
reads into a reference sequence, query on a genomic database and perform genetic tests …

When gene meets cloud: Enabling scalable and efficient range query on encrypted genomic data

W Sun, N Zhang, W Lou, YT Hou - IEEE INFOCOM 2017-IEEE …, 2017 - ieeexplore.ieee.org
As the cost of human full genome sequencing continues to fall, we will soon witness a
prodigious amount of human genomic data in the public cloud. To protect the confidentiality …

Efficient and secure outsourcing of genomic data storage

JS Sousa, C Lefebvre, Z Huang, JL Raisaro… - BMC medical …, 2017 - Springer
Background Cloud computing is becoming the preferred solution for efficiently dealing with
the increasing amount of genomic data. Yet, outsourcing storage and processing sensitive …

Secure sequence similarity search on encrypted genomic data

MSR Mahdi, MZ Hasan… - 2017 IEEE/ACM …, 2017 - ieeexplore.ieee.org
Genomic data is being produced rapidly by both individuals and enterprises and needs to
be outsourced from local machines to a cloud for better flexibility. Outsourcing also …

[HTML][HTML] Accurate filtering of privacy-sensitive information in raw genomic data

J Decouchant, M Fernandes, M Völp, FM Couto… - Journal of biomedical …, 2018 - Elsevier
Sequencing thousands of human genomes has enabled breakthroughs in many areas,
among them precision medicine, the study of rare diseases, and forensics. However, mass …

Patient-controlled encrypted genomic data: an approach to advance clinical genomics

YJ Trakadis - BMC Medical Genomics, 2012 - Springer
Background The revolution in DNA sequencing technologies over the past decade has
made it feasible to sequence an individual's whole genome at a relatively low cost. The …

Privacy-preserving substring search on multi-source encrypted gene data

S Qin, F Zhou, Z Zhang, Z Xu - IEEE Access, 2020 - ieeexplore.ieee.org
Substring searching on gene sequence data is widely used for analyzing the association
between a list of gene mutations and a specific disease. As substring search usually has a …