Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

Q Pan, O Shai, LJ Lee, BJ Frey, BJ Blencowe - Nature genetics, 2008 - nature.com
We carried out the first analysis of alternative splicing complexity in human tissues using
mRNA-Seq data. New splice junctions were detected in∼ 20% of multiexon genes, many of …

[HTML][HTML] Thousands of exon skipping events differentiate among splicing patterns in sixteen human tissues

L Florea, L Song, SL Salzberg - F1000Research, 2013 - ncbi.nlm.nih.gov
Alternative splicing is widely recognized for its roles in regulating genes and creating gene
diversity. However, despite many efforts, the repertoire of gene splicing variation is still …

Alternative splicing signatures in RNA‐seq data: percent spliced in (PSI)

S Schafer, K Miao, CC Benson, M Heinig… - Current protocols in …, 2015 - Wiley Online Library
Thousands of alternative exons are spliced out of messenger RNA to increase protein
diversity. High‐throughput sequencing of short cDNA fragments (RNA‐seq) generates a …

Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events

H Tilgner, F Jahanbani, T Blauwkamp, A Moshrefi… - Nature …, 2015 - nature.com
Alternative splicing shapes mammalian transcriptomes, with many RNA molecules
undergoing multiple distant alternative splicing events. Comprehensive transcriptome …

Variation in alternative splicing across human tissues

G Yeo, D Holste, G Kreiman, CB Burge - Genome biology, 2004 - Springer
Background Alternative pre-mRNA splicing (AS) is widely used by higher eukaryotes to
generate different protein isoforms in specific cell or tissue types. To compare AS events …

Noisy splicing drives mRNA isoform diversity in human cells

JK Pickrell, AA Pai, Y Gilad, JK Pritchard - PLoS genetics, 2010 - journals.plos.org
While the majority of multiexonic human genes show some evidence of alternative splicing,
it is unclear what fraction of observed splice forms is functionally relevant. In this study, we …

The relationship between alternative splicing and proteomic complexity

BJ Blencowe - Trends in biochemical sciences, 2017 - cell.com
Tress and colleagues proposed that only a minor fraction of splice variants detected in
transcriptome profiling data are translated and, therefore, that most splice variants have little …

Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays

JM Johnson, J Castle, P Garrett-Engele, Z Kan… - Science, 2003 - science.org
Alternative pre–messenger RNA (pre-mRNA) splicing plays important roles in development,
physiology, and disease, and more than half of human genes are alternatively spliced. To …

A genomic view of alternative splicing

B Modrek, C Lee - Nature genetics, 2002 - nature.com
Recent genome-wide analyses of alternative splicing indicate that 40–60% of human genes
have alternative splice forms, suggesting that alternative splicing is one of the most …

The ribosome-engaged landscape of alternative splicing

RJ Weatheritt, T Sterne-Weiler… - Nature structural & …, 2016 - nature.com
High-throughput RNA sequencing (RNA-seq) has revealed an enormous complexity of
alternative splicing (AS) across diverse cell and tissue types. However, it is currently …