Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics

C Grones, T Eekhout, D Shi, M Neumann… - The Plant …, 2024 - academic.oup.com
Single-cell and single-nucleus RNA-sequencing technologies capture the expression of
plant genes at an unprecedented resolution. Therefore, these technologies are gaining …

Advances and opportunities in single-cell transcriptomics for plant research

C Seyfferth, J Renema, JR Wendrich… - Annual Review of …, 2021 - annualreviews.org
Single-cell approaches are quickly changing our view on biological systems by increasing
the spatiotemporal resolution of our analyses to the level of the individual cell. The field of …

Single-cell transcriptomics is revolutionizing the improvement of plant biotechnology research: recent advances and future opportunities

H Kaur, P Jha, SJ Ochatt, V Kumar - Critical Reviews in …, 2024 - Taylor & Francis
Single-cell approaches are a promising way to obtain high-resolution transcriptomics data
and have the potential to revolutionize the study of plant growth and development. Recent …

Challenges and perspectives in applying single nuclei RNA-seq technology in plant biology

SA Cervantes-Pérez, S Thibivillliers, S Tennant… - Plant Science, 2022 - Elsevier
Plant single-cell RNA-seq technology quantifies the abundance of plant transcripts at a
single-cell resolution. Deciphering the transcriptomes of each plant cell, their regulation …

Single-cell transcriptome analysis in plants: advances and challenges

R Shaw, X Tian, J Xu - Molecular Plant, 2021 - cell.com
The rapid and enthusiastic adoption of single-cell RNA sequencing (scRNA-seq) has
demonstrated that this technology is far more than just another way to perform transcriptome …

[PDF][PDF] Plant single-cell multiomics: cracking the molecular profiles of plant cells

S Thibivilliers, M Libault - Trends in Plant Science, 2021 - Elsevier
Single-cell-omics technologies help to reveal the differential use of the genomic information
of different cell types composing plant species, during cell differentiation, and in response to …

The potential of single-cell profiling in plants

I Efroni, KD Birnbaum - Genome biology, 2016 - Springer
Single-cell transcriptomics has been employed in a growing number of animal studies, but
the technique has yet to be widely used in plants. Nonetheless, early studies indicate that …

Single-cell transcriptomics: a high-resolution avenue for plant functional genomics

C Rich-Griffin, A Stechemesser, J Finch, E Lucas… - Trends in plant …, 2020 - cell.com
Plant function is the result of the concerted action of single cells in different tissues.
Advances in RNA-seq technologies and tissue processing allow us now to capture …

[HTML][HTML] Recent progresses in plant single-cell transcriptomics

D Zheng, J Xu, Y Lu, H Chen, Q Chu, L Fan - Crop Design, 2023 - Elsevier
High-throughput sequencing technologies at single-cell resolution have great potential to
reveal a new landscape of plant cells. Single-cell/nucleus RNA (scRNA/snRNA), single …

[HTML][HTML] A comparative analysis of single-cell transcriptomic technologies in plants and animals

VR Netla, H Shinde, G Kumar, A Dudhate, JC Hong… - Current Plant …, 2023 - Elsevier
The development of sequencing methods has resulted in the investigation of many
unexplored research areas. Among the different sequencing methods, single-cell …