Concept bag: A new method for computing concept similarity in biomedical data

RL Bradshaw, R Gouripeddi, JC Facelli - … 2019, Granada, Spain, May 8-10 …, 2019 - Springer
Biomedical data are a rich source of information and knowledge, not only for direct patient
care, but also for secondary use in population health, clinical research, and translational …

[PDF][PDF] Concept bag: a new method for computing similarity

RL Bradshaw - 2016 - core.ac.uk
Biomedical data are a rich source of information and knowledge. Not only are they useful for
direct patient care, but they may also offer answers to important population-based questions …

[HTML][HTML] A hybrid knowledge-based and data-driven approach to identifying semantically similar concepts

R Pivovarov, N Elhadad - Journal of biomedical informatics, 2012 - Elsevier
An open research question when leveraging ontological knowledge is when to treat different
concepts separately from each other and when to aggregate them. For instance, concepts …

Calculating semantic relatedness for biomedical use in a knowledge-poor environment

M Rybinski, JF Aldana-Montes - BMC bioinformatics, 2014 - Springer
Background Computing semantic relatedness between textual labels representing
biological and medical concepts is a crucial task in many automated knowledge extraction …

Mapping of biomedical text to concepts of lexicons, terminologies, and ontologies

M Bada - Biomedical Literature Mining, 2014 - Springer
Abstract Concept mapping is a fundamental task in biomedical text mining in which textual
mentions of concepts of interest are annotated with specific entries of lexicons …

[PDF][PDF] Data integration through data elements: Mapping data elements to terminological resources

F Mougin, A Burgun, O Bodenreider - Proceedings of the Second …, 2006 - Citeseer
Data integration is a crucial task in the biomedical domain. Data elements (DEs) play an
important role in data integration and we propose to map DEs to terminological resources as …

Evaluation of disambiguation strategies on biomedical text categorization

M Rais, A Lachkar - … : 4th International Conference, IWBBIO 2016, Granada …, 2016 - Springer
A common and ordinary way of representing a text is as a Bag of its component Words BoW.
This Representation suffers from the lack of sense in resulting representations ignoring all …

[HTML][HTML] Towards the development of a conceptual distance metric for the UMLS

JE Caviedes, JJ Cimino - Journal of biomedical informatics, 2004 - Elsevier
The objective of this work is to investigate the feasibility of conceptual similarity metrics in the
framework of the Unified Medical Language System (UMLS). We have investigated an …

Computing knowledge-based semantic similarity from the Web: An application to the biomedical domain

D Sánchez, M Batet, A Valls - … , KSEM 2009, Vienna, Austria, November 25 …, 2009 - Springer
Computation of semantic similarity between concepts is a very common problem in many
language related tasks and knowledge domains. In the biomedical field, several approaches …

Extending import detection algorithms for concept import from two to three biomedical terminologies

VK Keloth, J Geller, Y Chen, J Xu - BMC medical informatics and decision …, 2020 - Springer
Background While enrichment of terminologies can be achieved in different ways, filling
gaps in the IS-A hierarchy backbone of a terminology appears especially promising. To …