STRING v10: protein–protein interaction networks, integrated over the tree of life

D Szklarczyk, A Franceschini, S Wyder… - Nucleic acids …, 2015 - academic.oup.com
The many functional partnerships and interactions that occur between proteins are at the
core of cellular processing and their systematic characterization helps to provide context in …

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

D Szklarczyk, JH Morris, H Cook, M Kuhn… - Nucleic acids …, 2016 - academic.oup.com
A system-wide understanding of cellular function requires knowledge of all functional
interactions between the expressed proteins. The STRING database aims to collect and …

STRING v9. 1: protein-protein interaction networks, with increased coverage and integration

A Franceschini, D Szklarczyk, S Frankild… - Nucleic acids …, 2012 - academic.oup.com
Complete knowledge of all direct and indirect interactions between proteins in a given cell
would represent an important milestone towards a comprehensive description of cellular …

The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest

D Szklarczyk, R Kirsch, M Koutrouli… - Nucleic acids …, 2023 - academic.oup.com
Much of the complexity within cells arises from functional and regulatory interactions among
proteins. The core of these interactions is increasingly known, but novel interactions …

STRING 7—recent developments in the integration and prediction of protein interactions

C Von Mering, LJ Jensen, M Kuhn… - Nucleic acids …, 2007 - academic.oup.com
Abstract Information on protein–protein interactions is still mostly limited to a small number of
model organisms, and originates from a wide variety of experimental and computational …

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

D Szklarczyk, AL Gable, D Lyon, A Junge… - Nucleic acids …, 2019 - academic.oup.com
Proteins and their functional interactions form the backbone of the cellular machinery. Their
connectivity network needs to be considered for the full understanding of biological …

STRING 8—a global view on proteins and their functional interactions in 630 organisms

LJ Jensen, M Kuhn, M Stark, S Chaffron… - Nucleic acids …, 2009 - academic.oup.com
Functional partnerships between proteins are at the core of complex cellular phenotypes,
and the networks formed by interacting proteins provide researchers with crucial scaffolds …

STRING: known and predicted protein–protein associations, integrated and transferred across organisms

C Von Mering, LJ Jensen, B Snel… - Nucleic acids …, 2005 - academic.oup.com
A full description of a protein's function requires knowledge of all partner proteins with which
it specifically associates. From a functional perspective,'association'can mean direct physical …

The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets

D Szklarczyk, AL Gable, KC Nastou, D Lyon… - Nucleic acids …, 2021 - academic.oup.com
Cellular life depends on a complex web of functional associations between biomolecules.
Among these associations, protein–protein interactions are particularly important due to their …

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

D Szklarczyk, A Franceschini, M Kuhn… - Nucleic acids …, 2010 - academic.oup.com
An essential prerequisite for any systems-level understanding of cellular functions is to
correctly uncover and annotate all functional interactions among proteins in the cell. Toward …