Function and functional redundancy in microbial systems

S Louca, MF Polz, F Mazel, MBN Albright… - Nature ecology & …, 2018 - nature.com
Microbial communities often exhibit incredible taxonomic diversity, raising questions
regarding the mechanisms enabling species coexistence and the role of this diversity in …

Obligate cross-feeding expands the metabolic niche of bacteria

L Oña, S Giri, N Avermann, M Kreienbaum… - Nature Ecology & …, 2021 - nature.com
Bacteria frequently engage in obligate metabolic mutualisms with other microorganisms.
However, it remains generally unclear how the resulting metabolic dependencies affect the …

Metabolic exchanges are ubiquitous in natural microbial communities

C Kost, KR Patil, J Friedman, SL Garcia… - Nature Microbiology, 2023 - nature.com
Microbial communities drive global biogeochemical cycles and shape the health of plants
and animals—including humans. Their structure and function are determined by ecological …

Metabolic dependencies drive species co-occurrence in diverse microbial communities

A Zelezniak, S Andrejev… - Proceedings of the …, 2015 - National Acad Sciences
Microbial communities populate most environments on earth and play a critical role in
ecology and human health. Their composition is thought to be largely shaped by …

Metabolic specialization and the assembly of microbial communities

DR Johnson, F Goldschmidt, EE Lilja… - The ISME …, 2012 - academic.oup.com
Metabolic specialization is a general biological principle that shapes the assembly of
microbial communities. Individual cell types rarely metabolize a wide range of substrates …

Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems

AR Pacheco, M Moel, D Segrè - Nature communications, 2019 - nature.com
Metabolic exchange mediates interactions among microbes, helping explain diversity in
microbial communities. As these interactions often involve a fitness cost, it is unclear how …

Competitive and cooperative metabolic interactions in bacterial communities

S Freilich, R Zarecki, O Eilam, ES Segal… - Nature …, 2011 - nature.com
Revealing the ecological principles that shape communities is a major challenge of the post-
genomic era. To date, a systematic approach for describing inter-species interactions has …

Functional attractors in microbial community assembly

S Estrela, JCC Vila, N Lu, D Bajić, M Rebolleda-Gómez… - Cell Systems, 2022 - cell.com
For microbiome biology to become a more predictive science, we must identify which
descriptive features of microbial communities are reproducible and predictable, which are …

Microbial diversity arising from thermodynamic constraints

T Großkopf, OS Soyer - The ISME journal, 2016 - academic.oup.com
The microbial world displays an immense taxonomic diversity. This diversity is manifested
also in a multitude of metabolic pathways that can utilise different substrates and produce …

High taxonomic variability despite stable functional structure across microbial communities

S Louca, SMS Jacques, APF Pires, JS Leal… - Nature ecology & …, 2016 - nature.com
Understanding the processes that are driving variation of natural microbial communities
across space or time is a major challenge for ecologists. Environmental conditions strongly …